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    SMC5 structural maintenance of chromosomes 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702219, updated on 5-Mar-2024

    Summary

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    Gene symbol
    SMC5
    Gene description
    structural maintenance of chromosomes 5
    See related
    Ensembl:ENSMMUG00000008346
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SMC5 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (85668656..85773205)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (86439611..86544115)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 95 Neighboring gene uncharacterized LOC106993784 Neighboring gene MAM domain containing 2 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC114672812 Neighboring gene uncharacterized LOC114672811 Neighboring gene uncharacterized LOC114672817 Neighboring gene KLF transcription factor 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Smc5-Smc6 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    structural maintenance of chromosomes protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      85668656..85773205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015117868.2 → XP_014973354.1  structural maintenance of chromosomes protein 5 isoform X1

      UniProtKB/TrEMBL
      H9FRR7
      Related
      ENSMMUP00000010943.3, ENSMMUT00000011671.4
      Conserved Domains (3) summary
      cd03277
      Location:975 → 1077
      ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
      COG1196
      Location:53 → 1055
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam05600
      Location:645 → 716
      DUF773; Protein of unknown function (DUF773)

    2. XM_015117869.2 → XP_014973355.1  structural maintenance of chromosomes protein 5 isoform X2

      UniProtKB/TrEMBL
      H9Z6R6
      Related
      ENSMMUP00000064609.1, ENSMMUT00000080429.1
      Conserved Domains (2) summary
      cd03277
      Location:960 → 1062
      ABC_SMC5_euk; ATP-binding cassette domain of eukaryotic SMC5 proteins
      COG1196
      Location:53 → 1040
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_003723312.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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