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    TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696602, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TAF1Dprovided by VGNC
    Official Full Name
    TATA-box binding protein associated factor, RNA polymerase I subunit Dprovided by VGNC
    Primary source
    VGNC:VGNC:101413
    See related
    Ensembl:ENSMMUG00000011646
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TAF1D in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (86992074..87003685, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (86373357..86384960, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 295 Neighboring gene small nucleolar RNA U2-19 Neighboring gene small nucleolar RNA U2-30 Neighboring gene small nucleolar RNA SNORA25 Neighboring gene small nucleolar RNA SNORA32 Neighboring gene small nucleolar RNA Z40 Neighboring gene small nucleolar RNA SNORA1 Neighboring gene small nucleolar RNA SNORA8 Neighboring gene small nucleolar RNA SNORD5 Neighboring gene small nucleolar RNA SNORA18 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene chromosome 14 C11orf54 homolog Neighboring gene microRNA mir-1304 Neighboring gene U4 spliceosomal RNA Neighboring gene mediator complex subunit 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase transcription factor SL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA box-binding protein-associated factor RNA polymerase I subunit D
    Names
    TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257644.1 → NP_001244573.1  TATA box-binding protein-associated factor RNA polymerase I subunit D

      See identical proteins and their annotated locations for NP_001244573.1

      Status: PROVISIONAL

      Source sequence(s)
      JU336351
      UniProtKB/TrEMBL
      A0A5F8AK54, F6PTS1, F6ZAI3
      Related
      ENSMMUP00000036773.3, ENSMMUT00000043785.3
      Conserved Domains (1) summary
      pfam15333
      Location:31 → 244
      TAF1D; TATA box-binding protein-associated factor 1D

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      86992074..87003685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832528.1 → XP_028688361.1  TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X1

      UniProtKB/TrEMBL
      A0A5F8AK54, F6PTS1, F6ZAI3
      Conserved Domains (1) summary
      pfam15333
      Location:31 → 244
      TAF1D; TATA box-binding protein-associated factor 1D

    2. XM_028832530.1 → XP_028688363.1  TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X1

      UniProtKB/TrEMBL
      A0A5F8AK54, F6PTS1, F6ZAI3
      Conserved Domains (1) summary
      pfam15333
      Location:31 → 244
      TAF1D; TATA box-binding protein-associated factor 1D

    3. XM_028832534.1 → XP_028688367.1  TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X2

      Conserved Domains (1) summary
      pfam15333
      Location:31 → 242
      TAF1D; TATA box-binding protein-associated factor 1D

    4. XM_028832533.1 → XP_028688366.1  TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X2

      Conserved Domains (1) summary
      pfam15333
      Location:31 → 242
      TAF1D; TATA box-binding protein-associated factor 1D

    5. XM_028832532.1 → XP_028688365.1  TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X1

      UniProtKB/TrEMBL
      A0A5F8AK54, F6PTS1, F6ZAI3
      Conserved Domains (1) summary
      pfam15333
      Location:31 → 244
      TAF1D; TATA box-binding protein-associated factor 1D

    6. XM_028832531.1 → XP_028688364.1  TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X1

      UniProtKB/TrEMBL
      A0A5F8AK54, F6PTS1, F6ZAI3
      Conserved Domains (1) summary
      pfam15333
      Location:31 → 244
      TAF1D; TATA box-binding protein-associated factor 1D
    Nucleotide Protein
    Heading Accession and Version

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