ZNF71 zinc finger protein 71 [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: ZNF71provided by VGNC
Official Full Name: zinc finger protein 71provided by VGNC
Primary source: VGNC:VGNC:97849
See related: Ensembl:ENSMMUG00000021675
Gene type: protein coding
RefSeq status: MODEL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human all
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Genomic context

Location:: chromosome: 19

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	19	NC_041772.1 (56330741..56357800)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	19	NC_027911.1 (52564109..52590981, complement)

Chromosome 19 - NC_041772.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D19S230E (e-PCR)
- UniSTS:147458

A009Y38 (e-PCR)
- UniSTS:56328

D19S230E (e-PCR)
- UniSTS:19475

D19S600 (e-PCR)
- UniSTS:58663

RH35916 (e-PCR)
- UniSTS:79918

G32993 (e-PCR)
- UniSTS:117570

D19S699E (e-PCR)
- UniSTS:150599

G59366 (e-PCR)
- UniSTS:136531

USP29__5044 (e-PCR)
- UniSTS:462944

D19S887 (e-PCR), detects polymorphism
- UniSTS:63078

AFMa342ye9 (e-PCR)
- UniSTS:12392

PEG3 (e-PCR)
- UniSTS:504454

ZNF543 (e-PCR)
- UniSTS:504463

47926cd (e-PCR)
- UniSTS:466078

STS-W93046 (e-PCR)
- UniSTS:79521

SHGC-32171 (e-PCR)
- UniSTS:78243

SHGC-145271 (e-PCR)
- UniSTS:183205

PMC310910P2 (e-PCR)
- UniSTS:272810

RH18153 (e-PCR)
- UniSTS:209605

D19S404 (e-PCR), detects polymorphism
- UniSTS:14281

SGC34114 (e-PCR)
- UniSTS:19187

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables histone H3K36 methyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables histone H3K4 methyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables recombination hotspot binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of reciprocal meiotic recombination	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: endothelial zinc finger protein induced by tumor necrosis factor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041772.1 Reference Mmul_10 Primary Assembly

Range

56330741..56357800

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_028839726.1 → XP_028695559.1 endothelial zinc finger protein induced by tumor necrosis factor alpha isoform X1

UniProtKB/TrEMBL

A0A5F7ZPH8

Related

ENSMMUP00000042433.2, ENSMMUT00000078495.2

Conserved Domains (3) summary

COG5048
Location:187 → 544

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:332 → 352

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:13 → 54

KRAB; KRAB box
XM_015125104.2 → XP_014980590.1 endothelial zinc finger protein induced by tumor necrosis factor alpha isoform X3

UniProtKB/TrEMBL

F7F4L0

Related

ENSMMUP00000062206.1, ENSMMUT00000098096.1

Conserved Domains (2) summary

COG5048
Location:127 → 479

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:272 → 292

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_015125101.2 → XP_014980587.1 endothelial zinc finger protein induced by tumor necrosis factor alpha isoform X1

UniProtKB/TrEMBL

A0A5F7ZPH8

Conserved Domains (3) summary

COG5048
Location:187 → 544

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:332 → 352

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:13 → 54

KRAB; KRAB box
XM_028839727.1 → XP_028695560.1 endothelial zinc finger protein induced by tumor necrosis factor alpha isoform X3

UniProtKB/TrEMBL

F7F4L0

Conserved Domains (2) summary

COG5048
Location:127 → 479

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:272 → 292

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_015125102.2 → XP_014980588.1 endothelial zinc finger protein induced by tumor necrosis factor alpha isoform X2

UniProtKB/TrEMBL

A0A5F7ZYB2

Related

ENSMMUP00000069635.1, ENSMMUT00000104080.1

Conserved Domains (4) summary

COG5048
Location:165 → 517

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:310 → 330

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:168 → 190

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:322 → 346

zf-H2C2_2; Zinc-finger double domain