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    CLEC18A C-type lectin domain family 18, member A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709768, updated on 18-Aug-2023

    Summary

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    Gene symbol
    CLEC18A
    Gene description
    C-type lectin domain family 18, member A
    Locus tag
    EGK_12991
    See related
    Ensembl:ENSMMUG00000009424
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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    Genomic context

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    See CLEC18A in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (61300978..61321807, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (54390692..54403749)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoproteins C1/C2-like Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene exosome component 6 Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit Neighboring gene golgi glycoprotein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    C-type lectin domain family 18 member C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194394.2 → NP_001181323.1  C-type lectin domain family 18 member C precursor

      See identical proteins and their annotated locations for NP_001181323.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000291
      UniProtKB/TrEMBL
      A0A8J8XJI7, F6RY13, F6X9G0, G7NR11
      Related
      ENSMMUP00000012329.2, ENSMMUT00000013156.4
      Conserved Domains (3) summary
      cd00037
      Location:310 → 434
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cd00054
      Location:230 → 261
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd05380
      Location:50 → 183
      CAP_euk; Eukaryotic CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      61300978..61321807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028840543.1 → XP_028696376.1  C-type lectin domain family 18 member C isoform X1

      UniProtKB/TrEMBL
      A0A8J8XJI7, F6RY13, F6X9G0, G7NR11
      Conserved Domains (3) summary
      cd00037
      Location:310 → 434
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cd00054
      Location:230 → 261
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd05380
      Location:50 → 183
      CAP_euk; Eukaryotic CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins

    2. XM_028840544.1 → XP_028696377.1  C-type lectin domain family 18 member C isoform X1

      UniProtKB/TrEMBL
      A0A8J8XJI7, F6RY13, F6X9G0, G7NR11
      Conserved Domains (3) summary
      cd00037
      Location:310 → 434
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cd00054
      Location:230 → 261
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd05380
      Location:50 → 183
      CAP_euk; Eukaryotic CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins

    3. XM_028840541.1 → XP_028696374.1  C-type lectin domain family 18 member C isoform X1

      UniProtKB/TrEMBL
      A0A8J8XJI7, F6RY13, F6X9G0, G7NR11
      Conserved Domains (3) summary
      cd00037
      Location:310 → 434
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cd00054
      Location:230 → 261
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd05380
      Location:50 → 183
      CAP_euk; Eukaryotic CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins

    4. XM_015126510.2 → XP_014981996.1  C-type lectin domain family 18 member C isoform X2

      UniProtKB/TrEMBL
      A0A8J8XJI7, F6RY13, G7NR11
      Conserved Domains (3) summary
      cd00037
      Location:279 → 403
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cd00054
      Location:230 → 261
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd05380
      Location:50 → 183
      SCP_euk; SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed ...

    RNA

    1. XR_001441793.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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