U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RHBDF1 rhomboid 5 homolog 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693423, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RHBDF1provided by VGNC
    Official Full Name
    rhomboid 5 homolog 1provided by VGNC
    Primary source
    VGNC:VGNC:99583
    See related
    Ensembl:ENSMMUG00000000588
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RHBDF1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (72584..87719, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (14056..29206, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674340 Neighboring gene RNA polymerase III subunit K Neighboring gene small nuclear ribonucleoprotein U11/U12 subunit 25 Neighboring gene NPR3 like, GATOR1 complex subunit Neighboring gene N-methylpurine DNA glycosylase Neighboring gene hemoglobin subunit zeta Neighboring gene hemoglobin subunit zeta

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of epidermal growth factor receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    inactive rhomboid protein 1
    Names
    rhomboid family member 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      72584..87719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125178.2 → XP_014980664.2  inactive rhomboid protein 1 isoform X3

      UniProtKB/TrEMBL
      G7NQC0
      Conserved Domains (2) summary
      pfam12595
      Location:91 → 308
      Rhomboid_SP; Rhomboid serine protease
      pfam01694
      Location:650 → 790
      Rhomboid; Rhomboid family

    2. XM_028840831.1 → XP_028696664.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NQC0
      Conserved Domains (2) summary
      pfam12595
      Location:127 → 344
      Rhomboid_SP; Rhomboid serine protease
      pfam01694
      Location:686 → 826
      Rhomboid; Rhomboid family

    3. XM_028840833.1 → XP_028696666.1  inactive rhomboid protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NQC0
      Related
      ENSMMUP00000000791.4, ENSMMUT00000000852.4
      Conserved Domains (2) summary
      pfam12595
      Location:114 → 331
      Rhomboid_SP; Rhomboid serine protease
      pfam01694
      Location:673 → 813
      Rhomboid; Rhomboid family

    4. XM_028840832.1 → XP_028696665.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NQC0
      Conserved Domains (2) summary
      pfam12595
      Location:127 → 344
      Rhomboid_SP; Rhomboid serine protease
      pfam01694
      Location:686 → 826
      Rhomboid; Rhomboid family

    5. XM_028840834.1 → XP_028696667.1  inactive rhomboid protein 1 isoform X4

      UniProtKB/TrEMBL
      G7NQC0
      Conserved Domains (2) summary
      pfam01694
      Location:496 → 637
      Rhomboid; Rhomboid family
      pfam12595
      Location:1 → 157
      Rhomboid_SP; Rhomboid serine protease
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials