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    RCHY1 ring finger and CHY zinc finger domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701580, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RCHY1provided by VGNC
    Official Full Name
    ring finger and CHY zinc finger domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:76753
    Locus tag
    EGK_15783
    See related
    Ensembl:ENSMMUG00000009177
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RCHY1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (58204995..58246560)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (59041829..59083486)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase like 2 Neighboring gene odontogenesis associated phosphoprotein Neighboring gene THAP domain containing 6 Neighboring gene 40S ribosomal protein SA-like Neighboring gene prostate androgen-regulated mucin-like protein 1 Neighboring gene uncharacterized LOC114678321 Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING finger and CHY zinc finger domain-containing protein 1
    NP_001248474.1
    XP_014994004.1
    XP_028703899.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261545.1 → NP_001248474.1  RING finger and CHY zinc finger domain-containing protein 1

      See identical proteins and their annotated locations for NP_001248474.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046679
      UniProtKB/TrEMBL
      A0A8J8Y5D3, F7HPB9, G7MT23
      Related
      ENSMMUP00000012031.2, ENSMMUT00000012834.4
      Conserved Domains (3) summary
      cd16464
      Location:144 → 187
      RING-H2_Pirh2; RING finger, H2 subclass, found in p53-induced RING-H2 protein (Pirh2) and similar proteins
      pfam05495
      Location:20 → 93
      zf-CHY; CHY zinc finger
      pfam14599
      Location:191 → 249
      zinc_ribbon_6; Zinc-ribbon

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      58204995..58246560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015138518.2 → XP_014994004.1  RING finger and CHY zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QPM7
      Related
      ENSMMUP00000050004.1, ENSMMUT00000060426.2
      Conserved Domains (3) summary
      pfam05495
      Location:20 → 91
      zf-CHY; CHY zinc finger
      pfam14599
      Location:182 → 240
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:144 → 178
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_028848066.1 → XP_028703899.1  RING finger and CHY zinc finger domain-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd16464
      Location:17 → 60
      RING-H2_Pirh2; RING finger, H2 subclass, found in p53-induced RING-H2 protein (Pirh2) and similar proteins
      pfam14599
      Location:64 → 122
      zinc_ribbon_6; Zinc-ribbon
    Nucleotide Protein
    Heading Accession and Version

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