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    LIMCH1 LIM and calponin homology domains 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707416, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LIMCH1provided by VGNC
    Official Full Name
    LIM and calponin homology domains 1provided by VGNC
    Primary source
    VGNC:VGNC:74155
    See related
    Ensembl:ENSMMUG00000007805
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LIMCH1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (40526070..40869046)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (41137007..41478268)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106998316 Neighboring gene ubiquitin C-terminal hydrolase L1 Neighboring gene uncharacterized LOC114678284 Neighboring gene uncharacterized LOC114678285 Neighboring gene U1 spliceosomal RNA Neighboring gene paired like homeobox 2B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables myosin II head/neck binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actomyosin structure organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of stress fiber assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of focal adhesion assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM and calponin homology domains-containing protein 1
    Names
    LIM and calponin homology domains-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      40526070..40869046
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015138274.2 → XP_014993760.1  LIM and calponin homology domains-containing protein 1 isoform X9

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (4) summary
      smart00132
      Location:1013 → 1070
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 417
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:771 → 808
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. XM_015138280.2 → XP_014993766.1  LIM and calponin homology domains-containing protein 1 isoform X13

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (4) summary
      smart00132
      Location:987 → 1044
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 417
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:771 → 808
      GBP_C; Guanylate-binding protein, C-terminal domain

    3. XM_028848415.1 → XP_028704248.1  LIM and calponin homology domains-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (4) summary
      smart00132
      Location:1015 → 1072
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 418
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:770 → 807
      GBP_C; Guanylate-binding protein, C-terminal domain

    4. XM_028848416.1 → XP_028704249.1  LIM and calponin homology domains-containing protein 1 isoform X10

      UniProtKB/TrEMBL
      I0FQ40, I2CTG1
      Conserved Domains (4) summary
      smart00132
      Location:1012 → 1069
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 418
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:770 → 807
      GBP_C; Guanylate-binding protein, C-terminal domain

    5. XM_015138281.2 → XP_014993767.1  LIM and calponin homology domains-containing protein 1 isoform X14

      UniProtKB/TrEMBL
      H9FRK1, I0FQ40
      Conserved Domains (4) summary
      smart00132
      Location:986 → 1043
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 417
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:770 → 807
      GBP_C; Guanylate-binding protein, C-terminal domain

    6. XM_015138278.2 → XP_014993764.1  LIM and calponin homology domains-containing protein 1 isoform X12

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (4) summary
      smart00132
      Location:999 → 1056
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 405
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:783 → 820
      GBP_C; Guanylate-binding protein, C-terminal domain

    7. XM_028848417.1 → XP_028704250.1  LIM and calponin homology domains-containing protein 1 isoform X11

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (4) summary
      smart00132
      Location:1000 → 1057
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 406
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:758 → 795
      GBP_C; Guanylate-binding protein, C-terminal domain

    8. XM_028848418.1 → XP_028704251.1  LIM and calponin homology domains-containing protein 1 isoform X15

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (4) summary
      smart00132
      Location:974 → 1031
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 406
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:758 → 795
      GBP_C; Guanylate-binding protein, C-terminal domain

    9. XM_028848414.1 → XP_028704247.1  LIM and calponin homology domains-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      F7CPN4
      Related
      ENSMMUP00000010259.4, ENSMMUT00000010934.4
      Conserved Domains (4) summary
      smart00132
      Location:1041 → 1098
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:250 → 418
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:796 → 833
      GBP_C; Guanylate-binding protein, C-terminal domain

    10. XM_028848408.1 → XP_028704241.1  LIM and calponin homology domains-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QXK1
      Related
      ENSMMUP00000052781.2, ENSMMUT00000071285.2
      Conserved Domains (4) summary
      smart00132
      Location:1584 → 1641
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:813 → 962
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:1339 → 1376
      GBP_C; Guanylate-binding protein, C-terminal domain

    11. XM_028848409.1 → XP_028704242.1  LIM and calponin homology domains-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QXK1
      Conserved Domains (4) summary
      smart00132
      Location:1560 → 1617
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:813 → 962
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:1315 → 1352
      GBP_C; Guanylate-binding protein, C-terminal domain

    12. XM_028848410.1 → XP_028704243.1  LIM and calponin homology domains-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QXK1
      Conserved Domains (4) summary
      smart00132
      Location:1559 → 1616
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:813 → 962
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:1314 → 1351
      GBP_C; Guanylate-binding protein, C-terminal domain

    13. XM_028848411.1 → XP_028704244.1  LIM and calponin homology domains-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5QXK1
      Related
      ENSMMUP00000010261.4, ENSMMUT00000010936.4
      Conserved Domains (4) summary
      smart00132
      Location:1556 → 1613
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:813 → 962
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:1314 → 1351
      GBP_C; Guanylate-binding protein, C-terminal domain

    14. XM_028848412.1 → XP_028704245.1  LIM and calponin homology domains-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5QXK1
      Conserved Domains (4) summary
      smart00132
      Location:1530 → 1587
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      cd00014
      Location:26 → 138
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam15949
      Location:813 → 962
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:1314 → 1351
      GBP_C; Guanylate-binding protein, C-terminal domain

    15. XM_028848413.1 → XP_028704246.1  LIM and calponin homology domains-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      G7MST5
      Conserved Domains (3) summary
      smart00132
      Location:1397 → 1454
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      pfam15949
      Location:654 → 803
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:1155 → 1192
      GBP_C; Guanylate-binding protein, C-terminal domain

    16. XM_028848420.1 → XP_028704253.1  LIM and calponin homology domains-containing protein 1 isoform X19

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (3) summary
      smart00132
      Location:833 → 890
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      pfam15949
      Location:96 → 264
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:617 → 654
      GBP_C; Guanylate-binding protein, C-terminal domain

    17. XM_015138285.2 → XP_014993771.1  LIM and calponin homology domains-containing protein 1 isoform X16

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (3) summary
      smart00132
      Location:861 → 918
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      pfam15949
      Location:96 → 264
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:616 → 653
      GBP_C; Guanylate-binding protein, C-terminal domain

    18. XM_028848419.1 → XP_028704252.1  LIM and calponin homology domains-containing protein 1 isoform X17

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (3) summary
      smart00132
      Location:858 → 915
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      pfam15949
      Location:96 → 264
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:616 → 653
      GBP_C; Guanylate-binding protein, C-terminal domain

    19. XM_015138290.2 → XP_014993776.1  LIM and calponin homology domains-containing protein 1 isoform X20

      UniProtKB/TrEMBL
      H9FRK2, I0FQ40
      Conserved Domains (3) summary
      smart00132
      Location:832 → 889
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      pfam15949
      Location:96 → 263
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:616 → 653
      GBP_C; Guanylate-binding protein, C-terminal domain

    20. XM_015138286.2 → XP_014993772.1  LIM and calponin homology domains-containing protein 1 isoform X18

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (3) summary
      smart00132
      Location:846 → 903
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      pfam15949
      Location:96 → 251
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:604 → 641
      GBP_C; Guanylate-binding protein, C-terminal domain

    21. XM_015138291.2 → XP_014993777.1  LIM and calponin homology domains-containing protein 1 isoform X21

      UniProtKB/TrEMBL
      I0FQ40
      Conserved Domains (3) summary
      smart00132
      Location:820 → 877
      LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
      pfam15949
      Location:96 → 251
      DUF4757; Domain of unknown function (DUF4757)
      cl20817
      Location:604 → 641
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
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