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    HM13 histocompatibility minor 13 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713216, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HM13provided by VGNC
    Official Full Name
    histocompatibility minor 13provided by VGNC
    Primary source
    VGNC:VGNC:81418
    Locus tag
    EGK_02537
    See related
    Ensembl:ENSMMUG00000005119
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HM13 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (66761886..66817002)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (32506993..32561889, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670460 Neighboring gene RRAD and GEM like GTPase 1 Neighboring gene malignant T-cell-amplified sequence 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene inhibitor of DNA binding 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic endopeptidase activity, intramembrane cleaving IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in membrane protein proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal peptide processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic side of endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lumenal side of endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    minor histocompatibility antigen H13
    NP_001244349.1
    XP_015004727.1
    XP_028683191.1
    XP_028683192.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257420.1 → NP_001244349.1  minor histocompatibility antigen H13

      See identical proteins and their annotated locations for NP_001244349.1

      Status: PROVISIONAL

      Source sequence(s)
      JU336534
      UniProtKB/TrEMBL
      A0A5F8AAS6, F7BXY7
      Related
      ENSMMUP00000074073.1, ENSMMUT00000089401.1
      Conserved Domains (1) summary
      pfam04258
      Location:63 → 350
      Peptidase_A22B; Signal peptide peptidase

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      66761886..66817002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028827358.1 → XP_028683191.1  minor histocompatibility antigen H13 isoform X1

      UniProtKB/TrEMBL
      F7BY21
      Conserved Domains (1) summary
      pfam04258
      Location:63 → 393
      Peptidase_A22B; Signal peptide peptidase

    2. XM_028827359.1 → XP_028683192.1  minor histocompatibility antigen H13 isoform X3

      UniProtKB/TrEMBL
      F7BY21
      Conserved Domains (1) summary
      pfam04258
      Location:63 → 393
      Peptidase_A22B; Signal peptide peptidase

    3. XM_015149241.2 → XP_015004727.1  minor histocompatibility antigen H13 isoform X2

      UniProtKB/TrEMBL
      F7BXY7, G7N554
      Related
      ENSMMUP00000006785.4, ENSMMUT00000007220.4
      Conserved Domains (1) summary
      pfam04258
      Location:63 → 350
      Peptidase_A22B; Signal peptide peptidase

    RNA

    1. XR_003719774.1 RNA Sequence

      Related
      ENSMMUT00000007217.4

    2. XR_001447559.2 RNA Sequence

    3. XR_003719775.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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