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    PKD1 polycystin 1, transient receptor potential channel interacting [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694905, updated on 5-Mar-2024

    Summary

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    Gene symbol
    PKD1
    Gene description
    polycystin 1, transient receptor potential channel interacting
    See related
    Ensembl:ENSMMUG00000029263
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PKD1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (2118402..2166378, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (2106466..2155512, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene NHERF family PDZ scaffold protein 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene TSC complex subunit 2 Neighboring gene microRNA mir-1225 Neighboring gene uncharacterized LOC106994912 Neighboring gene small nucleolar RNA SNORD60 Neighboring gene RAB26, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in kidney development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polycystin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      2118402..2166378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028841483.1 → XP_028697316.1  polycystin-1 isoform X9

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2476
      PCC; polycystin cation channel protein
      smart00303
      Location:2756 → 2805
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:2863 → 2982
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3461 → 3870
      PKD_channel; Polycystin cation channel

    2. XM_028841480.1 → XP_028697313.1  polycystin-1 isoform X4

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2728
      PCC; polycystin cation channel protein
      smart00303
      Location:3008 → 3057
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:3115 → 3234
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3706 → 4115
      PKD_channel; Polycystin cation channel

    3. XM_028841478.1 → XP_028697311.1  polycystin-1 isoform X2

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2728
      PCC; polycystin cation channel protein
      smart00303
      Location:3008 → 3057
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:3115 → 3234
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3712 → 4121
      PKD_channel; Polycystin cation channel

    4. XM_028841479.1 → XP_028697312.1  polycystin-1 isoform X3

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2728
      PCC; polycystin cation channel protein
      smart00303
      Location:3008 → 3057
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:3115 → 3234
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3707 → 4116
      PKD_channel; Polycystin cation channel

    5. XM_015125342.2 → XP_014980828.2  polycystin-1 isoform X5

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2728
      PCC; polycystin cation channel protein
      smart00303
      Location:3008 → 3057
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:3115 → 3234
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3713 → 4115
      PKD_channel; Polycystin cation channel

    6. XM_028841477.1 → XP_028697310.1  polycystin-1 isoform X1

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2728
      PCC; polycystin cation channel protein
      smart00303
      Location:3008 → 3057
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:3115 → 3234
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3713 → 4122
      PKD_channel; Polycystin cation channel

    7. XM_015125345.2 → XP_014980831.2  polycystin-1 isoform X7

      UniProtKB/TrEMBL
      F7HI29, G7NQU9
      Related
      ENSMMUP00000003803.4, ENSMMUT00000004028.4
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2728
      PCC; polycystin cation channel protein
      smart00303
      Location:3008 → 3057
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:3115 → 3234
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3706 → 4108
      PKD_channel; Polycystin cation channel

    8. XM_015125344.2 → XP_014980830.2  polycystin-1 isoform X6

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (6) summary
      TIGR00864
      Location:99 → 2728
      PCC; polycystin cation channel protein
      smart00303
      Location:3008 → 3057
      GPS; G-protein-coupled receptor proteolytic site domain
      COG4886
      Location:52 → 128
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd01752
      Location:3115 → 3234
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      sd00031
      Location:72 → 94
      LRR_1; leucine-rich repeat [structural motif]
      pfam08016
      Location:3707 → 4109
      PKD_channel; Polycystin cation channel

    9. XM_028841482.1 → XP_028697315.1  polycystin-1 isoform X8

      UniProtKB/TrEMBL
      G7NQU9
      Conserved Domains (4) summary
      TIGR00864
      Location:1 → 2281
      PCC; polycystin cation channel protein
      smart00303
      Location:2561 → 2610
      GPS; G-protein-coupled receptor proteolytic site domain
      cd01752
      Location:2668 → 2787
      PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
      pfam08016
      Location:3266 → 3675
      PKD_channel; Polycystin cation channel

    RNA

    1. XR_003725615.1 RNA Sequence

    2. XR_001441596.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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