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    SPOCD1 SPOC domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706363, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SPOCD1provided by VGNC
    Official Full Name
    SPOC domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:77997
    See related
    Ensembl:ENSMMUG00000005466
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SPOCD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (192851264..192879430)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (30843344..30871426, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene KH RNA binding domain containing, signal transduction associated 1 Neighboring gene protein tyrosine phosphatase 4A2 Neighboring gene uncharacterized LOC106997348 Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene collagen type XVI alpha 1 chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SPOC domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      192851264..192879430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015133875.2 → XP_014989361.1  SPOC domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F7GNS3, H9ZF39
      Related
      ENSMMUP00000040460.2, ENSMMUT00000047426.3
      Conserved Domains (2) summary
      pfam07500
      Location:604 → 713
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:863 → 961
      SPOC; SPOC domain

    2. XM_015133881.2 → XP_014989367.1  SPOC domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      F7G2T4, H9ZF39
      Related
      ENSMMUP00000007227.3, ENSMMUT00000007695.4
      Conserved Domains (2) summary
      pfam07500
      Location:590 → 699
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:849 → 947
      SPOC; SPOC domain
    Nucleotide Protein
    Heading Accession and Version

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