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    PLEKHF1 pleckstrin homology and FYVE domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700343, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PLEKHF1provided by VGNC
    Official Full Name
    pleckstrin homology and FYVE domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:76085
    Locus tag
    EGK_10407
    See related
    Ensembl:ENSMMUG00000011373
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PLEKHF1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (29108359..29118562)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (25418903..25428906)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene V-set and transmembrane domain containing 2B Neighboring gene POP4 homolog, ribonuclease P/MRP subunit Neighboring gene translation initiation factor IF-2-like Neighboring gene chromosome 19 C19orf12 homolog Neighboring gene uncharacterized LOC114674039

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pleckstrin homology domain-containing family F member 1
    Names
    pleckstrin homology domain containing, family F (with FYVE domain) member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193737.2 → NP_001180666.1  pleckstrin homology domain-containing family F member 1

      See identical proteins and their annotated locations for NP_001180666.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000232
      UniProtKB/TrEMBL
      A0A8J8XE23, F6WEV7, G7NLE7
      Related
      ENSMMUP00000014924.1, ENSMMUT00000015925.3
      Conserved Domains (2) summary
      cd01218
      Location:7 → 129
      PH_Phafin2-like; Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain
      cd15754
      Location:148 → 211
      FYVE_PKHF1; FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1) and similar proteins

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      29108359..29118562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028838365.1 → XP_028694198.1  pleckstrin homology domain-containing family F member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XE23, F6WEV7, G7NLE7
      Related
      ENSMMUP00000065385.1, ENSMMUT00000092049.1
      Conserved Domains (2) summary
      cd01218
      Location:7 → 129
      PH_Phafin2-like; Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain
      cd15754
      Location:148 → 211
      FYVE_PKHF1; FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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