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    RNPC3 RNA binding region (RNP1, RRM) containing 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717115, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RNPC3provided by VGNC
    Official Full Name
    RNA binding region (RNP1, RRM) containing 3provided by VGNC
    Primary source
    VGNC:VGNC:106489
    See related
    Ensembl:ENSMMUG00000018039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RNPC3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (120678319..120710693, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (104358757..104391184)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene pancreatic alpha-amylase-like Neighboring gene actin, cytoplasmic 1-like Neighboring gene amylase, alpha 2B (pancreatic) Neighboring gene uncharacterized LOC114671420 Neighboring gene RNPC3 divergent transcript

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U12 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA intronic binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 40; RNA-binding region-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      120678319..120710693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028831084.1 → XP_028686917.1  RNA-binding region-containing protein 3 isoform X2

      UniProtKB/TrEMBL
      G7MIB9
      Conserved Domains (3) summary
      COG0724
      Location:332 → 517
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:418 → 500
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    2. XM_028831082.1 → XP_028686915.1  RNA-binding region-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      F7EVL6, G7MIB9
      Related
      ENSMMUP00000023705.4, ENSMMUT00000025339.4
      Conserved Domains (3) summary
      COG0724
      Location:333 → 518
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:419 → 501
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    3. XM_015146032.2 → XP_015001518.2  RNA-binding region-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      F7EVL6, G7MIB9
      Conserved Domains (3) summary
      COG0724
      Location:333 → 518
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:419 → 501
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    4. XM_028831077.1 → XP_028686910.1  RNA-binding region-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      F7EVL6, G7MIB9
      Conserved Domains (3) summary
      COG0724
      Location:333 → 518
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:419 → 501
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    RNA

    1. XR_001446871.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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