U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATP2B4 ATPase plasma membrane Ca2+ transporting 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 574317, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ATP2B4provided by VGNC
    Official Full Name
    ATPase plasma membrane Ca2+ transporting 4provided by VGNC
    Primary source
    VGNC:VGNC:70183
    See related
    Ensembl:ENSMMUG00000021116
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    ATP2B1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ATP2B4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (61137959..61252552)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (162883171..162999373, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene opticin Neighboring gene ribosome biogenesis protein NSA2 homolog pseudogene Neighboring gene small nucleolar RNA SNORA77 Neighboring gene lymphocyte transmembrane adaptor 1 Neighboring gene zinc finger CCCH-type containing 11A Neighboring gene zinc finger BED-type containing 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type calcium transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables PDZ domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    plasma membrane calcium-transporting ATPase 4
    NP_001028098.1
    XP_014973662.1
    XP_014973678.1
    XP_014973694.1
    XP_014973703.1
    XP_014973707.1
    XP_014973712.1
    XP_028707080.1
    XP_028707125.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032926.1 → NP_001028098.1  plasma membrane calcium-transporting ATPase 4

      See identical proteins and their annotated locations for NP_001028098.1

      Status: PROVISIONAL

      Source sequence(s)
      AY928176
      UniProtKB/TrEMBL
      G7MEW0, Q5BN38
      Related
      ENSMMUP00000027792.2, ENSMMUT00000029695.4
      Conserved Domains (7) summary
      TIGR01517
      Location:20 → 1052
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam00122
      Location:153 → 454
      E1-E2_ATPase; E1-E2 ATPase
      pfam00689
      Location:868 → 1049
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam00690
      Location:47 → 111
      Cation_ATPase_N; Cation transporter/ATPase, N-terminus
      pfam12424
      Location:1089 → 1136
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
      pfam12710
      Location:655 → 794
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:515 → 604
      Cation_ATPase; Cation transport ATPase (P-type)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      61137959..61252552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015118226.2 → XP_014973712.1  plasma membrane calcium-transporting ATPase 4 isoform X5

      UniProtKB/TrEMBL
      G7MEW0
      Conserved Domains (7) summary
      TIGR01517
      Location:20 → 1052
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam00122
      Location:153 → 454
      E1-E2_ATPase; E1-E2 ATPase
      pfam00689
      Location:868 → 1049
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam00690
      Location:47 → 111
      Cation_ATPase_N; Cation transporter/ATPase, N-terminus
      pfam12424
      Location:1089 → 1172
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
      pfam12710
      Location:655 → 794
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:515 → 604
      Cation_ATPase; Cation transport ATPase (P-type)

    2. XM_028851292.1 → XP_028707125.1  plasma membrane calcium-transporting ATPase 4 isoform X4

      UniProtKB/TrEMBL
      A0A5F8AFY1
      Conserved Domains (2) summary
      TIGR01517
      Location:20 → 1040
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1077 → 1138
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    3. XM_015118217.2 → XP_014973703.1  plasma membrane calcium-transporting ATPase 4 isoform X2

      UniProtKB/TrEMBL
      A0A5F8ABU2, G7MEW0
      Related
      ENSMMUP00000074852.1, ENSMMUT00000099004.1
      Conserved Domains (7) summary
      TIGR01517
      Location:20 → 1040
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam00122
      Location:153 → 442
      E1-E2_ATPase; E1-E2 ATPase
      pfam00689
      Location:856 → 1037
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam00690
      Location:47 → 111
      Cation_ATPase_N; Cation transporter/ATPase, N-terminus
      pfam12424
      Location:1077 → 1124
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
      pfam12710
      Location:643 → 782
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:503 → 592
      Cation_ATPase; Cation transport ATPase (P-type)

    4. XM_015118221.2 → XP_014973707.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A5F8AFY1, A0A5K1UV41
      Conserved Domains (2) summary
      TIGR01517
      Location:20 → 1052
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1089 → 1150
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    5. XM_015118192.2 → XP_014973678.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      F7HU67, G7MEW0
      Conserved Domains (7) summary
      TIGR01517
      Location:20 → 1052
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam00122
      Location:153 → 454
      E1-E2_ATPase; E1-E2 ATPase
      pfam00689
      Location:868 → 1049
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam00690
      Location:47 → 111
      Cation_ATPase_N; Cation transporter/ATPase, N-terminus
      pfam12424
      Location:1089 → 1136
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
      pfam12710
      Location:655 → 794
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:515 → 604
      Cation_ATPase; Cation transport ATPase (P-type)

    6. XM_015118176.2 → XP_014973662.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      F7HU67, G7MEW0
      Related
      ENSMMUP00000073978.1, ENSMMUT00000081240.1
      Conserved Domains (7) summary
      TIGR01517
      Location:20 → 1052
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam00122
      Location:153 → 454
      E1-E2_ATPase; E1-E2 ATPase
      pfam00689
      Location:868 → 1049
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam00690
      Location:47 → 111
      Cation_ATPase_N; Cation transporter/ATPase, N-terminus
      pfam12424
      Location:1089 → 1136
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
      pfam12710
      Location:655 → 794
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:515 → 604
      Cation_ATPase; Cation transport ATPase (P-type)

    7. XM_028851247.1 → XP_028707080.1  plasma membrane calcium-transporting ATPase 4 isoform X3

      UniProtKB/TrEMBL
      A0A5F8AFY1, A0A5K1UV41
      Related
      ENSMMUP00000079463.1, ENSMMUT00000097339.1
      Conserved Domains (2) summary
      TIGR01517
      Location:20 → 1052
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12424
      Location:1089 → 1150
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

    8. XM_015118208.2 → XP_014973694.1  plasma membrane calcium-transporting ATPase 4 isoform X1

      UniProtKB/TrEMBL
      F7HU67, G7MEW0
      Conserved Domains (7) summary
      TIGR01517
      Location:20 → 1052
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam00122
      Location:153 → 454
      E1-E2_ATPase; E1-E2 ATPase
      pfam00689
      Location:868 → 1049
      Cation_ATPase_C; Cation transporting ATPase, C-terminus
      pfam00690
      Location:47 → 111
      Cation_ATPase_N; Cation transporter/ATPase, N-terminus
      pfam12424
      Location:1089 → 1136
      ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
      pfam12710
      Location:655 → 794
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:515 → 604
      Cation_ATPase; Cation transport ATPase (P-type)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.