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    KDM3A lysine demethylase 3A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697775, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KDM3Aprovided by VGNC
    Official Full Name
    lysine demethylase 3Aprovided by VGNC
    Primary source
    VGNC:VGNC:73871
    See related
    Ensembl:ENSMMUG00000013124
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    JMJD1A
    Orthologs
    human mouse all
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    Genomic context

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    See KDM3A in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (21982632..22035257, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (88194516..88247370)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671912 Neighboring gene ring finger protein 103 Neighboring gene charged multivesicular body protein 3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114671913 Neighboring gene uncharacterized LOC114671914 Neighboring gene U8 small nucleolar RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 3A
    Names
    jumonji domain containing 1A
    XP_002799372.2
    XP_028688154.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      21982632..22035257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832321.1 → XP_028688154.1  lysine-specific demethylase 3A isoform X2

      UniProtKB/TrEMBL
      H9ZB71
      Conserved Domains (3) summary
      smart00558
      Location:1048 → 1118
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam07964
      Location:732 → 920
      Red1; Rec10 / Red1
      cl21464
      Location:1135 → 1248
      cupin_like; Conserved domain found in cupin and related proteins

    2. XM_002799326.3 → XP_002799372.2  lysine-specific demethylase 3A isoform X1

      UniProtKB/TrEMBL
      F6ZGH6, H9ZB71
      Related
      ENSMMUP00000017249.4, ENSMMUT00000018422.4
      Conserved Domains (2) summary
      smart00558
      Location:1064 → 1134
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cl40423
      Location:1151 → 1264
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version

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