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    D130079A08Rik RIKEN cDNA D130079A08 gene [ Mus musculus (house mouse) ]

    Gene ID: 320671, updated on 2-Nov-2024

    Summary

    Official Symbol
    D130079A08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D130079A08 geneprovided by MGI
    Primary source
    MGI:MGI:2444500
    See related
    Ensembl:ENSMUSG00000115424 AllianceGenome:MGI:2444500
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    linc-3a
    Summary
    Is expressed in nervous system and sensory organ. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See D130079A08Rik in Genome Data Viewer
    Location:
    14 E2.3; 14 54.18 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (104525869..104696772, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (104288433..104459336, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35308 Neighboring gene predicted gene, 52151 Neighboring gene predicted gene, 35362 Neighboring gene POU domain, class 4, transcription factor 1 Neighboring gene ORC ubiquitin ligase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168067.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC121997, AC151910
      Related
      ENSMUST00000228095.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      104525869..104696772 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177223.2: Suppressed sequence

      Description
      NM_177223.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.