U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SEMA5A semaphorin 5A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696019, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SEMA5Aprovided by VGNC
    Official Full Name
    semaphorin 5Aprovided by VGNC
    Primary source
    VGNC:VGNC:77169
    See related
    Ensembl:ENSMMUG00000020160
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SEMA5A in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (8991061..9501142, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (9047376..9338585, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678742 Neighboring gene uncharacterized LOC114679013 Neighboring gene uncharacterized LOC114678743 Neighboring gene uncharacterized LOC114678744 Neighboring gene small nucleolar RNA SNORD123 Neighboring gene uncharacterized LOC114678745 Neighboring gene uncharacterized LOC696140

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon extension IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    semaphorin-5A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266494.1 → NP_001253423.1  semaphorin-5A precursor

      See identical proteins and their annotated locations for NP_001253423.1

      Status: PROVISIONAL

      Source sequence(s)
      JV489143
      UniProtKB/TrEMBL
      A0A5F8ANK1, H9EQT1, I2CT92
      Related
      ENSMMUP00000078954.1, ENSMMUT00000108663.1
      Conserved Domains (3) summary
      cd11263
      Location:50 → 485
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:844 → 896
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:486 → 533
      PSI; Plexin repeat

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      8991061..9501142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849092.1 → XP_028704925.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A5F8ANK1, F6TR62
      Conserved Domains (3) summary
      cd11263
      Location:50 → 485
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:850 → 902
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:486 → 524
      PSI; domain found in Plexins, Semaphorins and Integrins

    2. XM_028849091.1 → XP_028704924.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A5F8ANK1, F6TR62
      Related
      ENSMMUP00000026545.3, ENSMMUT00000028365.4
      Conserved Domains (3) summary
      cd11263
      Location:50 → 485
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:850 → 902
      TSP1; Thrombospondin type 1 repeats
      smart00423
      Location:486 → 524
      PSI; domain found in Plexins, Semaphorins and Integrins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials