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    PCGF6 polycomb group ring finger 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714508, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PCGF6provided by VGNC
    Official Full Name
    polycomb group ring finger 6provided by VGNC
    Primary source
    VGNC:VGNC:75662
    See related
    Ensembl:ENSMMUG00000008873
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PCGF6 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (103857359..103897876, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (99111186..99151831, complement)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene putative protein FAM10A5 Neighboring gene internexin neuronal intermediate filament protein alpha Neighboring gene U11 spliceosomal RNA Neighboring gene TATA-box binding protein associated factor 5 Neighboring gene ATP synthase membrane subunit k Neighboring gene programmed cell death 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PRC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polycomb group RING finger protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194611.2 → NP_001181540.1  polycomb group RING finger protein 6

      See identical proteins and their annotated locations for NP_001181540.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000493
      UniProtKB/TrEMBL
      F7DTZ0
      Related
      ENSMMUP00000011638.2, ENSMMUT00000012409.4
      Conserved Domains (3) summary
      pfam16207
      Location:275 → 340
      RAWUL; RAWUL domain RING finger- and WD40-associated ubiquitin-like
      cd16738
      Location:130 → 174
      RING-HC_PCGF6; RING finger found in polycomb group RING finger protein 6 (PCGF6) and similar proteins
      cl28410
      Location:134 → 236
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      103857359..103897876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001113708.4 → XP_001113708.1  polycomb group RING finger protein 6 isoform X2

      See identical proteins and their annotated locations for XP_001113708.1

      UniProtKB/TrEMBL
      F7DTX8
      Conserved Domains (2) summary
      pfam16207
      Location:200 → 265
      RAWUL; RAWUL domain RING finger- and WD40-associated ubiquitin-like
      cd16738
      Location:130 → 174
      RING-HC_PCGF6; RING finger found in polycomb group RING finger protein 6 (PCGF6) and similar proteins

    2. XM_015148018.2 → XP_015003504.1  polycomb group RING finger protein 6 isoform X1

      Conserved Domains (2) summary
      pfam00097
      Location:134 → 172
      zf-C3HC4; Zinc finger, C3HC4 type (RING finger)
      pfam16207
      Location:270 → 311
      RAWUL; RAWUL domain RING finger- and WD40-associated ubiquitin-like
    Nucleotide Protein
    Heading Accession and Version

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