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    SMYD3 SET and MYND domain containing 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703402, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMYD3provided by VGNC
    Official Full Name
    SET and MYND domain containing 3provided by VGNC
    Primary source
    VGNC:VGNC:77713
    See related
    Ensembl:ENSMMUG00000005777
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SMYD3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (2568571..3324828)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (222295531..223086870, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene consortin, connexin sorting protein Neighboring gene transcription factor B2, mitochondrial Neighboring gene uncharacterized LOC114678649 Neighboring gene U6 spliceosomal RNA Neighboring gene mitochondrial intermembrane space import and assembly protein 40 pseudogene Neighboring gene uncharacterized LOC114678650 Neighboring gene uncharacterized LOC114678652 Neighboring gene kinesin family member 26B Neighboring gene uncharacterized LOC114678651

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase SMYD3
    Names
    SET and MYND domain-containing protein 3
    NP_001252862.1
    XP_028695298.1
    XP_028695329.1
    XP_028695366.1
    XP_028695401.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265933.1 → NP_001252862.1  histone-lysine N-methyltransferase SMYD3

      See identical proteins and their annotated locations for NP_001252862.1

      Status: PROVISIONAL

      Source sequence(s)
      JU472861
      UniProtKB/TrEMBL
      F6W0Y7, G7MFK2, H9ETM0
      Related
      ENSMMUP00000007626.3, ENSMMUT00000008109.4
      Conserved Domains (2) summary
      pfam00856
      Location:201 → 239
      SET; SET domain
      pfam01753
      Location:49 → 87
      zf-MYND; MYND finger

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      2568571..3324828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028839465.1 → XP_028695298.1  histone-lysine N-methyltransferase SMYD3 isoform X1

      UniProtKB/TrEMBL
      G7MFK2
      Conserved Domains (2) summary
      pfam00856
      Location:201 → 239
      SET; SET domain
      pfam01753
      Location:49 → 87
      zf-MYND; MYND finger

    2. XM_028839496.1 → XP_028695329.1  histone-lysine N-methyltransferase SMYD3 isoform X2

      Conserved Domains (2) summary
      pfam00856
      Location:201 → 234
      SET; SET domain
      pfam01753
      Location:49 → 87
      zf-MYND; MYND finger

    3. XM_028839533.1 → XP_028695366.1  histone-lysine N-methyltransferase SMYD3 isoform X3

      UniProtKB/TrEMBL
      G7MFK2
      Conserved Domains (2) summary
      cl40432
      Location:5 → 234
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
      pfam01753
      Location:49 → 87
      zf-MYND; MYND finger

    4. XM_028839568.1 → XP_028695401.1  histone-lysine N-methyltransferase SMYD3 isoform X4

      UniProtKB/TrEMBL
      G7MFK2
      Conserved Domains (1) summary
      pfam00856
      Location:89 → 127
      SET; SET domain
    Nucleotide Protein
    Heading Accession and Version

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