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    JARID2 jumonji and AT-rich interaction domain containing 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702291, updated on 17-Aug-2024

    Summary

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    Official Symbol
    JARID2provided by VGNC
    Official Full Name
    jumonji and AT-rich interaction domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:73956
    See related
    Ensembl:ENSMMUG00000015362
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See JARID2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (154482685..154762709, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (15533769..15815163)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene dystrobrevin binding protein 1 Neighboring gene uncharacterized LOC114677696 Neighboring gene uncharacterized LOC114677694 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial-like Neighboring gene 40S ribosomal protein S15a pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jumonji
    Names
    jumonji, AT rich interactive domain 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      154482685..154762709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015135588.2 → XP_014991074.1  protein Jumonji isoform X1

      UniProtKB/TrEMBL
      F6SNG9, G7MQS1, H9FU42
      Related
      ENSMMUP00000020142.3, ENSMMUT00000021535.4
      Conserved Domains (5) summary
      smart00545
      Location:556 → 597
      JmjN; Small domain found in the jumonji family of transcription factors
      PHA03169
      Location:423 → 550
      PHA03169; hypothetical protein; Provisional
      cd16870
      Location:620 → 731
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:916 → 1031
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:1139 → 1192
      zf-C5HC2; C5HC2 zinc finger

    2. XM_015135590.2 → XP_014991076.1  protein Jumonji isoform X3

      UniProtKB/TrEMBL
      G7MQS1
      Conserved Domains (5) summary
      smart00545
      Location:384 → 425
      JmjN; Small domain found in the jumonji family of transcription factors
      PHA03169
      Location:251 → 378
      PHA03169; hypothetical protein; Provisional
      cd16870
      Location:448 → 559
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:744 → 859
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:967 → 1020
      zf-C5HC2; C5HC2 zinc finger

    3. XM_015135591.2 → XP_014991077.1  protein Jumonji isoform X3

      UniProtKB/TrEMBL
      G7MQS1
      Conserved Domains (5) summary
      smart00545
      Location:384 → 425
      JmjN; Small domain found in the jumonji family of transcription factors
      PHA03169
      Location:251 → 378
      PHA03169; hypothetical protein; Provisional
      cd16870
      Location:448 → 559
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:744 → 859
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:967 → 1020
      zf-C5HC2; C5HC2 zinc finger

    4. XM_015135589.2 → XP_014991075.1  protein Jumonji isoform X2

      UniProtKB/TrEMBL
      A0A1D5Q1K3, G7MQS1
      Related
      ENSMMUP00000041915.2, ENSMMUT00000054472.2
      Conserved Domains (5) summary
      smart00545
      Location:518 → 559
      JmjN; Small domain found in the jumonji family of transcription factors
      PHA03169
      Location:385 → 512
      PHA03169; hypothetical protein; Provisional
      cd16870
      Location:582 → 693
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:878 → 993
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:1101 → 1154
      zf-C5HC2; C5HC2 zinc finger

    5. XM_028847821.1 → XP_028703654.1  protein Jumonji isoform X3

      UniProtKB/TrEMBL
      G7MQS1
      Conserved Domains (5) summary
      smart00545
      Location:384 → 425
      JmjN; Small domain found in the jumonji family of transcription factors
      PHA03169
      Location:251 → 378
      PHA03169; hypothetical protein; Provisional
      cd16870
      Location:448 → 559
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
      pfam02373
      Location:744 → 859
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:967 → 1020
      zf-C5HC2; C5HC2 zinc finger
    Nucleotide Protein
    Heading Accession and Version

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