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    RBM20 RNA binding motif protein 20 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698677, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RBM20provided by VGNC
    Official Full Name
    RNA binding motif protein 20provided by VGNC
    Primary source
    VGNC:VGNC:106096
    See related
    Ensembl:ENSMMUG00000019883
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RBM20 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (111209564..111405724)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (106584706..106780599)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670038 Neighboring gene small nucleolar RNA U13 Neighboring gene structural maintenance of chromosomes 3 Neighboring gene uncharacterized LOC107000272 Neighboring gene programmed cell death 4 Neighboring gene BBSome interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable RNA-binding protein 20; RNA-binding protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      111209564..111405724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826822.1 → XP_028682655.1  RNA-binding protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A1D5R2H5
      Conserved Domains (5) summary
      smart00451
      Location:1197 → 1231
      ZnF_U1; U1-like zinc finger
      COG4547
      Location:823 → 1002
      CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
      cd12685
      Location:556 → 631
      RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
      pfam05109
      Location:170 → 414
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam15440
      Location:670 → 937
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    2. XM_028826823.1 → XP_028682656.1  RNA-binding protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R2H5
      Conserved Domains (5) summary
      smart00451
      Location:1188 → 1222
      ZnF_U1; U1-like zinc finger
      COG4547
      Location:814 → 993
      CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
      cd12685
      Location:547 → 622
      RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
      pfam05109
      Location:170 → 414
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam15440
      Location:661 → 928
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    3. XM_001087170.4 → XP_001087170.3  RNA-binding protein 20 isoform X4

      UniProtKB/TrEMBL
      A0A1D5R2H5, A0A5F8AQE5, F7GRX3
      Related
      ENSMMUP00000080061.1, ENSMMUT00000095026.1
      Conserved Domains (5) summary
      smart00451
      Location:1160 → 1194
      ZnF_U1; U1-like zinc finger
      COG4547
      Location:786 → 965
      CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
      cd12685
      Location:519 → 594
      RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
      pfam05109
      Location:142 → 386
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam15440
      Location:633 → 900
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    4. XM_028826824.1 → XP_028682657.1  RNA-binding protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A1D5R2H5, F7GRX3
      Conserved Domains (5) summary
      smart00451
      Location:1169 → 1203
      ZnF_U1; U1-like zinc finger
      COG4547
      Location:795 → 974
      CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
      cd12685
      Location:528 → 603
      RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
      pfam05109
      Location:142 → 386
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam15440
      Location:642 → 909
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    5. XM_028826826.1 → XP_028682659.1  RNA-binding protein 20 isoform X6

      UniProtKB/TrEMBL
      F7GRX3
      Related
      ENSMMUP00000026137.4, ENSMMUT00000027938.4
      Conserved Domains (5) summary
      smart00451
      Location:1119 → 1153
      ZnF_U1; U1-like zinc finger
      COG4547
      Location:745 → 924
      CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
      cd12685
      Location:478 → 553
      RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
      pfam05109
      Location:92 → 336
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam15440
      Location:592 → 859
      THRAP3_BCLAF1; THRAP3/BCLAF1 family

    6. XM_028826825.1 → XP_028682658.1  RNA-binding protein 20 isoform X5

      UniProtKB/TrEMBL
      G7N145
      Related
      ENSMMUP00000073776.1, ENSMMUT00000092575.1
      Conserved Domains (5) summary
      smart00451
      Location:1132 → 1166
      ZnF_U1; U1-like zinc finger
      COG4547
      Location:758 → 937
      CobT2; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphorib... [Coenzyme transport and metabolism]
      cd12685
      Location:491 → 566
      RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
      pfam05109
      Location:105 → 349
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam15440
      Location:605 → 872
      THRAP3_BCLAF1; THRAP3/BCLAF1 family
    Nucleotide Protein
    Heading Accession and Version

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