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    PICALM phosphatidylinositol binding clathrin assembly protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706003, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PICALMprovided by VGNC
    Official Full Name
    phosphatidylinositol binding clathrin assembly proteinprovided by VGNC
    Primary source
    VGNC:VGNC:75802
    See related
    Ensembl:ENSMMUG00000019618
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PICALM in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (79195481..79308678, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (78547052..78660117, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 2 Neighboring gene coiled-coil domain containing 83 Neighboring gene tricarboxylate transport protein, mitochondrial pseudogene Neighboring gene uncharacterized LOC114672368 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114672369 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables clathrin heavy chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle budding from presynaptic endocytic zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in clathrin-coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in clathrin-coated vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of presynaptic endocytic zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol-binding clathrin assembly protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266499.1 → NP_001253428.1  phosphatidylinositol-binding clathrin assembly protein

      See identical proteins and their annotated locations for NP_001253428.1

      Status: PROVISIONAL

      Source sequence(s)
      JU477403
      UniProtKB/TrEMBL
      A0A1D5QDT7, F7B1Y0, H9ZE41
      Related
      ENSMMUP00000046206.2, ENSMMUT00000071341.2
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      79195481..79308678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015115303.2 → XP_014970789.1  phosphatidylinositol-binding clathrin assembly protein isoform X1

      UniProtKB/TrEMBL
      A0A1D5QC04
      Related
      ENSMMUP00000078269.1, ENSMMUT00000097134.1
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    2. XM_015115321.2 → XP_014970807.1  phosphatidylinositol-binding clathrin assembly protein isoform X12

      UniProtKB/TrEMBL
      F7B1Y0, H9ZE43
      Conserved Domains (2) summary
      COG4223
      Location:268 → 366
      COG4223; Uncharacterized conserved protein [Function unknown]
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    3. XM_015115320.2 → XP_014970806.1  phosphatidylinositol-binding clathrin assembly protein isoform X11

      UniProtKB/TrEMBL
      A0A1D5QC04
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    4. XM_015115322.2 → XP_014970808.1  phosphatidylinositol-binding clathrin assembly protein isoform X13

      UniProtKB/TrEMBL
      F7B1Y0, H9G0D4
      Conserved Domains (2) summary
      COG4223
      Location:268 → 366
      COG4223; Uncharacterized conserved protein [Function unknown]
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    5. XM_015115318.2 → XP_014970804.1  phosphatidylinositol-binding clathrin assembly protein isoform X9

      UniProtKB/TrEMBL
      A0A1D5QC04
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    6. XM_015115323.2 → XP_014970809.1  phosphatidylinositol-binding clathrin assembly protein isoform X14

      UniProtKB/TrEMBL
      F7B1X1, F7B1Y0, H9G0D5
      Related
      ENSMMUP00000025766.4, ENSMMUT00000027550.4
      Conserved Domains (2) summary
      COG4223
      Location:268 → 366
      COG4223; Uncharacterized conserved protein [Function unknown]
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    7. XM_015115319.2 → XP_014970805.1  phosphatidylinositol-binding clathrin assembly protein isoform X10

      UniProtKB/TrEMBL
      A0A1D5QC04
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    8. XM_015115316.2 → XP_014970802.1  phosphatidylinositol-binding clathrin assembly protein isoform X8

      UniProtKB/TrEMBL
      A0A1D5QC04
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    9. XM_015115314.2 → XP_014970800.1  phosphatidylinositol-binding clathrin assembly protein isoform X7

      UniProtKB/TrEMBL
      F7B1Y0
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    10. XM_015115309.2 → XP_014970795.1  phosphatidylinositol-binding clathrin assembly protein isoform X4

      UniProtKB/TrEMBL
      A0A1D5QC04
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    11. XM_015115313.2 → XP_014970799.1  phosphatidylinositol-binding clathrin assembly protein isoform X6

      UniProtKB/TrEMBL
      F7B1Y0
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    12. XM_015115304.2 → XP_014970790.1  phosphatidylinositol-binding clathrin assembly protein isoform X2

      UniProtKB/TrEMBL
      A0A1D5QC04
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    13. XM_015115307.2 → XP_014970793.1  phosphatidylinositol-binding clathrin assembly protein isoform X3

      UniProtKB/TrEMBL
      A0A1D5QC04
      Related
      ENSMMUP00000025768.4, ENSMMUT00000027552.4
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    14. XM_015115312.2 → XP_014970798.1  phosphatidylinositol-binding clathrin assembly protein isoform X5

      UniProtKB/TrEMBL
      F7B1Y0, H9G0D3
      Related
      ENSMMUP00000079960.1, ENSMMUT00000085971.1
      Conserved Domains (1) summary
      pfam07651
      Location:24 → 282
      ANTH; ANTH domain

    15. XM_028832638.1 → XP_028688471.1  phosphatidylinositol-binding clathrin assembly protein isoform X15

      UniProtKB/TrEMBL
      A0A1D5QC04
      Conserved Domains (2) summary
      COG4223
      Location:135 → 233
      COG4223; Uncharacterized conserved protein [Function unknown]
      cl02544
      Location:20 → 149
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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