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    SRBD1 S1 RNA binding domain 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714485, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SRBD1provided by VGNC
    Official Full Name
    S1 RNA binding domain 1provided by VGNC
    Primary source
    VGNC:VGNC:106226
    See related
    Ensembl:ENSMMUG00000003490
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SRBD1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (63190270..63405839)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (46122417..46337394, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene protein kinase C epsilon Neighboring gene uncharacterized LOC114671721 Neighboring gene acyl transferase 8-like Neighboring gene uncharacterized LOC114671722 Neighboring gene SIX homeobox 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleobase-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S1 RNA-binding domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      63190270..63405839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015112279.2 → XP_014967765.1  S1 RNA-binding domain-containing protein 1

      UniProtKB/TrEMBL
      F7E7F1, H9ZAP0
      Related
      ENSMMUP00000004654.3, ENSMMUT00000004941.4
      Conserved Domains (5) summary
      COG2183
      Location:209 → 990
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      cd05685
      Location:918 → 989
      S1_Tex; S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. ...
      pfam09371
      Location:218 → 413
      Tex_N; Tex-like protein N-terminal domain
      pfam12836
      Location:704 → 766
      HHH_3; Helix-hairpin-helix motif
      pfam16921
      Location:537 → 662
      Tex_YqgF; Tex protein YqgF-like domain
    Nucleotide Protein
    Heading Accession and Version

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