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    HCFC2 host cell factor C2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700316, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HCFC2provided by VGNC
    Official Full Name
    host cell factor C2provided by VGNC
    Primary source
    VGNC:VGNC:108347
    See related
    Ensembl:ENSMMUG00000057796
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HCFC2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (103768302..103815029)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (103978905..104021177)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene thymine DNA glycosylase Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene small nuclear ribonucleoprotein F-like Neighboring gene translation initiation factor IF-2-like Neighboring gene nuclear transcription factor Y subunit beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    host cell factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261732.1 → NP_001248661.1  host cell factor 2

      See identical proteins and their annotated locations for NP_001248661.1

      Status: PROVISIONAL

      Source sequence(s)
      JU334210
      UniProtKB/TrEMBL
      A0A5F7ZG35, F6ZF51
      Related
      ENSMMUP00000070811.1, ENSMMUT00000106109.1
      Conserved Domains (3) summary
      PLN02193
      Location:2 → 262
      PLN02193; nitrile-specifier protein
      cd00063
      Location:618 → 672
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:190 → 241
      Kelch; KELCH repeat [structural motif]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      103768302..103815029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015152548.2 → XP_015008034.1  host cell factor 2 isoform X2

      Conserved Domains (3) summary
      sd00038
      Location:190 → 241
      Kelch; KELCH repeat [structural motif]
      pfam13415
      Location:205 → 253
      Kelch_3; Galactose oxidase, central domain
      pfam13854
      Location:312 → 354
      Kelch_5; Kelch motif

    2. XM_015152547.2 → XP_015008033.1  host cell factor 2 isoform X1

      Conserved Domains (4) summary
      cd00063
      Location:529 → 583
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:101 → 152
      Kelch; KELCH repeat [structural motif]
      pfam13415
      Location:116 → 164
      Kelch_3; Galactose oxidase, central domain
      pfam13854
      Location:223 → 265
      Kelch_5; Kelch motif

    RNA

    1. XR_001448172.2 RNA Sequence

    2. XR_001448173.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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