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    BCL6 BCL6 transcription repressor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708736, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BCL6provided by VGNC
    Official Full Name
    BCL6 transcription repressorprovided by VGNC
    Primary source
    VGNC:VGNC:70036
    Locus tag
    EGK_12203
    See related
    Ensembl:ENSMMUG00000009198
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See BCL6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (10078077..10102251)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (191890226..191914384)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene LIM domain containing preferred translocation partner in lipoma Neighboring gene microRNA mir-28 Neighboring gene uncharacterized LOC114676212 Neighboring gene uncharacterized LOC106997166 Neighboring gene uncharacterized LOC106997167 Neighboring gene receptor transporter protein 2 Neighboring gene somatostatin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-cell lymphoma 6 protein
    Names
    B cell CLL/lymphoma 6

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261326.2 → NP_001248255.1  B-cell lymphoma 6 protein

      See identical proteins and their annotated locations for NP_001248255.1

      Status: PROVISIONAL

      Source sequence(s)
      JU476672
      UniProtKB/TrEMBL
      A0A5F8AQW6, A0A8J8XH14, F7HM62, G7MK80
      Related
      ENSMMUP00000080242.1, ENSMMUT00000089457.1
      Conserved Domains (4) summary
      PHA03247
      Location:172 → 426
      PHA03247; large tegument protein UL36; Provisional
      sd00017
      Location:576 → 596
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18331
      Location:8 → 125
      BTB_POZ_ZBTB27_BCL6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in B-cell lymphoma 6 protein (BCL-6)
      pfam13465
      Location:588 → 613
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      10078077..10102251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015132418.1 → XP_014987904.1  B-cell lymphoma 6 protein isoform X1

      UniProtKB/TrEMBL
      A0A5F8AQW6, A0A8J8XH14, F7HM62, G7MK80
      Related
      ENSMMUP00000081064.1, ENSMMUT00000086850.1
      Conserved Domains (4) summary
      PHA03247
      Location:172 → 426
      PHA03247; large tegument protein UL36; Provisional
      sd00017
      Location:576 → 596
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18331
      Location:8 → 125
      BTB_POZ_ZBTB27_BCL6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in B-cell lymphoma 6 protein (BCL-6)
      pfam13465
      Location:588 → 613
      zf-H2C2_2; Zinc-finger double domain

    2. XM_028843304.1 → XP_028699137.1  B-cell lymphoma 6 protein isoform X1

      UniProtKB/TrEMBL
      A0A5F8AQW6, A0A8J8XH14, F7HM62, G7MK80
      Conserved Domains (4) summary
      PHA03247
      Location:172 → 426
      PHA03247; large tegument protein UL36; Provisional
      sd00017
      Location:576 → 596
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18331
      Location:8 → 125
      BTB_POZ_ZBTB27_BCL6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in B-cell lymphoma 6 protein (BCL-6)
      pfam13465
      Location:588 → 613
      zf-H2C2_2; Zinc-finger double domain

    3. XM_015132419.2 → XP_014987905.1  B-cell lymphoma 6 protein isoform X1

      UniProtKB/TrEMBL
      A0A5F8AQW6, A0A8J8XH14, F7HM62, G7MK80
      Conserved Domains (4) summary
      PHA03247
      Location:172 → 426
      PHA03247; large tegument protein UL36; Provisional
      sd00017
      Location:576 → 596
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18331
      Location:8 → 125
      BTB_POZ_ZBTB27_BCL6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in B-cell lymphoma 6 protein (BCL-6)
      pfam13465
      Location:588 → 613
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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