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    UBTF upstream binding transcription factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711597, updated on 17-Aug-2024

    Summary

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    Official Symbol
    UBTFprovided by VGNC
    Official Full Name
    upstream binding transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:108187
    Locus tag
    EGK_08799
    See related
    Ensembl:ENSMMUG00000019924
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See UBTF in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (55467809..55484740, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (50077151..50093994, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 16 Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene ataxin 7 like 3 Neighboring gene uncharacterized LOC106994058 Neighboring gene SHC-transforming protein 1-like Neighboring gene solute carrier family 4 member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    nucleolar transcription factor 1
    Names
    Upstream-binding factor 1
    upstream binding transcription factor, RNA polymerase I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      55467809..55484740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119844.2 → XP_014975330.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QTZ1, A0A1D5QWZ9, A0A1D5RAC0, A0A663DA56, A0A8J8YSB1, G7NIX4, I0FUU4
      Related
      ENSMMUP00000057261.2, ENSMMUT00000071437.2
      Conserved Domains (3) summary
      cd01390
      Location:407 → 470
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    2. XM_015119846.2 → XP_014975332.1  nucleolar transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      F7GNN8, H9FZB2, I0FUU3
      Conserved Domains (3) summary
      cd01390
      Location:370 → 433
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:442 → 525
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    3. XM_015119847.2 → XP_014975333.1  nucleolar transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      F7GNN8, H9FZB2, I0FUU3
      Conserved Domains (3) summary
      cd01390
      Location:370 → 433
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:442 → 525
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    4. XM_015119843.2 → XP_014975329.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QTZ1, A0A1D5QWZ9, A0A1D5RAC0, A0A663DA56, A0A8J8YSB1, G7NIX4, I0FUU4
      Related
      ENSMMUP00000051521.2, ENSMMUT00000066322.2
      Conserved Domains (3) summary
      cd01390
      Location:407 → 470
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    5. XM_028836567.1 → XP_028692400.1  nucleolar transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      F7GNN8, H9FZB2, I0FUU3
      Related
      ENSMMUP00000079431.1, ENSMMUT00000091331.1
      Conserved Domains (3) summary
      cd01390
      Location:370 → 433
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:442 → 525
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    6. XM_015119842.2 → XP_014975328.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QTZ1, A0A1D5QWZ9, A0A1D5RAC0, A0A663DA56, A0A8J8YSB1, G7NIX4, I0FUU4
      Related
      ENSMMUP00000052579.2, ENSMMUT00000075800.2
      Conserved Domains (3) summary
      cd01390
      Location:407 → 470
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box

    7. XM_015119845.2 → XP_014975331.1  nucleolar transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QTZ1, A0A1D5QWZ9, A0A1D5RAC0, A0A663DA56, A0A8J8YSB1, G7NIX4, I0FUU4
      Conserved Domains (3) summary
      cd01390
      Location:407 → 470
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam14887
      Location:479 → 562
      HMG_box_5; HMG (high mobility group) box 5
      pfam00505
      Location:112 → 179
      HMG_box; HMG (high mobility group) box
    Nucleotide Protein
    Heading Accession and Version

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