U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SATB1 SATB homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696862, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SATB1provided by VGNC
    Official Full Name
    SATB homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:84086
    See related
    Ensembl:ENSMMUG00000019009
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SATB1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (29263868..29363646)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (174973614..175073398, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106997133 Neighboring gene UV excision repair protein RAD23 homolog B Neighboring gene phosducin-like protein 3 pseudogene Neighboring gene inorganic pyrophosphatase-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding protein SATB1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265648.1 → NP_001252577.1  DNA-binding protein SATB1

      See identical proteins and their annotated locations for NP_001252577.1

      Status: PROVISIONAL

      Source sequence(s)
      JV667263
      UniProtKB/TrEMBL
      H9YUZ5, I2CY91
      Related
      ENSMMUP00000076307.1, ENSMMUT00000088916.1
      Conserved Domains (4) summary
      smart00389
      Location:644 → 701
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      29263868..29363646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843128.1 → XP_028698961.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      F6XW50, G7MJX0
      Conserved Domains (4) summary
      smart00389
      Location:676 → 733
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    2. XM_028843130.1 → XP_028698963.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      F6XW50, G7MJX0
      Conserved Domains (4) summary
      smart00389
      Location:676 → 733
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    3. XM_028843129.1 → XP_028698962.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      F6XW50, G7MJX0
      Conserved Domains (4) summary
      smart00389
      Location:676 → 733
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    4. XM_015132197.2 → XP_014987683.1  DNA-binding protein SATB1 isoform X2

      UniProtKB/TrEMBL
      H9YUZ5, I2CY91
      Conserved Domains (4) summary
      smart00389
      Location:644 → 701
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    5. XM_015132200.2 → XP_014987686.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      F6XW50, G7MJX0
      Conserved Domains (4) summary
      smart00389
      Location:676 → 733
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    6. XM_028843126.1 → XP_028698959.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      F6XW50, G7MJX0
      Related
      ENSMMUP00000024996.4, ENSMMUT00000026713.4
      Conserved Domains (4) summary
      smart00389
      Location:676 → 733
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB

    7. XM_028843127.1 → XP_028698960.1  DNA-binding protein SATB1 isoform X1

      UniProtKB/TrEMBL
      F6XW50, G7MJX0
      Conserved Domains (4) summary
      smart00389
      Location:676 → 733
      HOX; Homeodomain
      pfam02376
      Location:497 → 567
      CUT; CUT domain
      pfam16534
      Location:72 → 170
      ULD; Ubiquitin-like oligomerization domain of SATB
      pfam16557
      Location:176 → 246
      CUTL; CUT1-like DNA-binding domain of SATB
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.