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    JMJD1C jumonji domain containing 1C [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697630, updated on 17-Aug-2024

    Summary

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    Official Symbol
    JMJD1Cprovided by VGNC
    Official Full Name
    jumonji domain containing 1Cprovided by VGNC
    Primary source
    VGNC:VGNC:73819
    See related
    Ensembl:ENSMMUG00000017727
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See JMJD1C in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (74447772..74811345)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (69198535..69562632)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 593 pseudogene Neighboring gene 39S ribosomal protein L35, mitochondrial pseudogene Neighboring gene receptor accessory protein 3 Neighboring gene uncharacterized LOC114669982 Neighboring gene PRELI domain-containing protein 1, mitochondrial pseudogene Neighboring gene microRNA mir-1296 Neighboring gene 40S ribosomal protein S3a pseudogene Neighboring gene nuclear receptor binding factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable JmjC domain-containing histone demethylation protein 2C
    XP_001091903.1
    XP_015003013.1
    XP_015003014.1
    XP_015003016.1
    XP_028682430.1
    XP_028682431.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      74447772..74811345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826598.1 → XP_028682431.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      F7F8B5
      Conserved Domains (3) summary
      smart00558
      Location:2058 → 2130
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam17380
      Location:75 → 286
      DUF5401; Family of unknown function (DUF5401)
      cl21464
      Location:2162 → 2261
      cupin_like; Conserved domain found in cupin and related proteins

    2. XM_028826597.1 → XP_028682430.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

      UniProtKB/TrEMBL
      F7F8B5
      Conserved Domains (3) summary
      smart00558
      Location:2095 → 2167
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam17380
      Location:112 → 323
      DUF5401; Family of unknown function (DUF5401)
      cl21464
      Location:2199 → 2298
      cupin_like; Conserved domain found in cupin and related proteins

    3. XM_015147527.2 → XP_015003013.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

      UniProtKB/TrEMBL
      F7F8B5
      Related
      ENSMMUP00000023314.4, ENSMMUT00000024915.4
      Conserved Domains (3) summary
      smart00558
      Location:2095 → 2167
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam17380
      Location:112 → 323
      DUF5401; Family of unknown function (DUF5401)
      cl21464
      Location:2199 → 2298
      cupin_like; Conserved domain found in cupin and related proteins

    4. XM_015147530.2 → XP_015003016.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

      UniProtKB/TrEMBL
      F7F8B5
      Conserved Domains (3) summary
      smart00558
      Location:1989 → 2061
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam12067
      Location:440 → 507
      Sox_C_TAD; Sox C-terminal transactivation domain
      cl21464
      Location:2093 → 2192
      cupin_like; Conserved domain found in cupin and related proteins

    5. XM_001091903.3 → XP_001091903.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

      See identical proteins and their annotated locations for XP_001091903.1

      UniProtKB/TrEMBL
      F7F8B5
      Conserved Domains (3) summary
      smart00558
      Location:2095 → 2167
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam17380
      Location:112 → 323
      DUF5401; Family of unknown function (DUF5401)
      cl21464
      Location:2199 → 2298
      cupin_like; Conserved domain found in cupin and related proteins

    6. XM_015147528.2 → XP_015003014.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      F7F8B5
      Conserved Domains (3) summary
      smart00558
      Location:2058 → 2130
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam17380
      Location:75 → 286
      DUF5401; Family of unknown function (DUF5401)
      cl21464
      Location:2162 → 2261
      cupin_like; Conserved domain found in cupin and related proteins
    Nucleotide Protein
    Heading Accession and Version

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