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    POLR2A RNA polymerase II subunit A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 721865, updated on 17-Aug-2024

    Summary

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    Official Symbol
    POLR2Aprovided by VGNC
    Official Full Name
    RNA polymerase II subunit Aprovided by VGNC
    Primary source
    VGNC:VGNC:99209
    See related
    Ensembl:ENSMMUG00000023620
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See POLR2A in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (7252061..7293579)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (7476189..7496914)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene cholinergic receptor nicotinic beta 1 subunit Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene solute carrier family 35 member G6 Neighboring gene uncharacterized LOC114673225 Neighboring gene tumor necrosis factor (ligand) superfamily, member 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II subunit RPB1
    Names
    polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
    XP_014973999.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      7252061..7293579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015118513.2 → XP_014973999.1  DNA-directed RNA polymerase II subunit RPB1

      UniProtKB/TrEMBL
      A0A1D5RJ13, H9F1K5
      Related
      ENSMMUP00000060307.1, ENSMMUT00000065663.2
      Conserved Domains (5) summary
      cd02584
      Location:1058 → 1476
      RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
      smart01104
      Location:1491 → 1610
      CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
      cd02733
      Location:19 → 876
      RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
      pfam05109
      Location:1854 → 1959
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam04992
      Location:896 → 1079
      RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
    Nucleotide Protein
    Heading Accession and Version

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