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    PMS1 PMS1 homolog 1, mismatch repair system component [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713641, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PMS1provided by VGNC
    Official Full Name
    PMS1 homolog 1, mismatch repair system componentprovided by VGNC
    Primary source
    VGNC:VGNC:81506
    See related
    Ensembl:ENSMMUG00000014318
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PMS1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (76961696..77068101)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (77223786..77331366)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene ankyrin and armadillo repeat containing Neighboring gene uncharacterized LOC114671377 Neighboring gene O-sialoglycoprotein endopeptidase like 1 Neighboring gene alpha carbonic anhydrase 8-like Neighboring gene ORMDL sphingolipid biosynthesis regulator 1 Neighboring gene glucosamine 6-phosphate N-acetyltransferase pseudogene Neighboring gene protein FAN pseudogene Neighboring gene telomeric repeat-binding factor 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MutLalpha complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PMS1 protein homolog 1
    Names
    PMS1 postmeiotic segregation increased 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      76961696..77068101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015110539.2 → XP_014966025.2  PMS1 protein homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QV81, A0A5S6R8P8, A0A8J8XF43, G7N8I0, H9FVY3, H9ZA76
      Related
      ENSMMUP00000018801.4, ENSMMUT00000020088.4
      Conserved Domains (2) summary
      cd01390
      Location:572 → 636
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      TIGR00585
      Location:1 → 318
      mutl; DNA mismatch repair protein MutL

    2. XM_015110540.2 → XP_014966026.2  PMS1 protein homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QV81, A0A5S6R8P8, A0A8J8XF43, G7N8I0, H9FVY3, H9ZA76
      Related
      ENSMMUP00000051961.2, ENSMMUT00000059731.2
      Conserved Domains (2) summary
      cd01390
      Location:572 → 636
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      TIGR00585
      Location:1 → 318
      mutl; DNA mismatch repair protein MutL

    3. XM_015110543.2 → XP_014966029.2  PMS1 protein homolog 1 isoform X3

      UniProtKB/TrEMBL
      F7AI00, H9FVY3, H9ZA76
      Related
      ENSMMUP00000037990.3, ENSMMUT00000044976.3
      Conserved Domains (2) summary
      cd01390
      Location:533 → 597
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      TIGR00585
      Location:1 → 279
      mutl; DNA mismatch repair protein MutL

    4. XM_028830932.1 → XP_028686765.1  PMS1 protein homolog 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RCY9, H9FVY3, H9ZA76
      Conserved Domains (2) summary
      cd01390
      Location:572 → 636
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      TIGR00585
      Location:1 → 318
      mutl; DNA mismatch repair protein MutL

    5. XM_028830933.1 → XP_028686766.1  PMS1 protein homolog 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RCY9, H9FVY3, H9ZA76
      Conserved Domains (2) summary
      cd01390
      Location:572 → 636
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      TIGR00585
      Location:1 → 318
      mutl; DNA mismatch repair protein MutL

    6. XM_028830931.1 → XP_028686764.1  PMS1 protein homolog 1 isoform X2

      UniProtKB/TrEMBL
      H9FVY3, H9ZA76
      Related
      ENSMMUP00000056184.2, ENSMMUT00000063789.2
      Conserved Domains (2) summary
      cd01390
      Location:572 → 636
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      TIGR00585
      Location:1 → 318
      mutl; DNA mismatch repair protein MutL

    7. XM_015110544.2 → XP_014966030.2  PMS1 protein homolog 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RCY9, H9FVY3, H9ZA76
      Related
      ENSMMUP00000058182.2, ENSMMUT00000058541.2
      Conserved Domains (2) summary
      cd01390
      Location:572 → 636
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      TIGR00585
      Location:1 → 318
      mutl; DNA mismatch repair protein MutL
    Nucleotide Protein
    Heading Accession and Version

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