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    PDE6D phosphodiesterase 6D [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712629, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PDE6Dprovided by VGNC
    Official Full Name
    phosphodiesterase 6Dprovided by VGNC
    Primary source
    VGNC:VGNC:104548
    Locus tag
    EGK_04894
    See related
    Ensembl:ENSMMUG00000064885
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PDE6D in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (119160068..119215366, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (114234757..114289976, complement)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106992764 Neighboring gene U4 spliceosomal RNA Neighboring gene prothymosin alpha Neighboring gene U6 spliceosomal RNA Neighboring gene COP9 signalosome subunit 7B Neighboring gene guanidinoacetate N-methyltransferase pseudogene Neighboring gene natriuretic peptide C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sensory perception of light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
    Names
    phosphodiesterase 6D, cGMP-specific, rod, delta
    NP_001181535.1
    XP_014966735.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194606.1 → NP_001181535.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

      See identical proteins and their annotated locations for NP_001181535.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000079
      UniProtKB/TrEMBL
      A0A5F8ABS5, A0A8J8XXR7, F7BMR1, G7N958
      Related
      ENSMMUP00000070059.1, ENSMMUT00000099798.1
      Conserved Domains (1) summary
      pfam05351
      Location:10 → 149
      GMP_PDE_delta; GMP-PDE, delta subunit

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      119160068..119215366 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015111249.2 → XP_014966735.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZIE3
      Related
      ENSMMUP00000064406.1, ENSMMUT00000090161.1
      Conserved Domains (1) summary
      pfam05351
      Location:10 → 88
      GMP_PDE_delta; GMP-PDE, delta subunit
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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