U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CHID1 chitinase domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701435, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CHID1provided by VGNC
    Official Full Name
    chitinase domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:71123
    Locus tag
    EGK_05838
    See related
    Ensembl:ENSMMUG00000003618
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CHID1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (924207..966926, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (718299..762126, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase II, I and III subunit L Neighboring gene tetraspanin 4 Neighboring gene U6 spliceosomal RNA Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene mucin 6, oligomeric mucus/gel-forming

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oligosaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    chitinase domain-containing protein 1
    NP_001253900.1
    XP_014968673.1
    XP_014968674.1
    XP_014968675.1
    XP_014968676.2
    XP_028688421.1
    XP_028688422.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266971.1 → NP_001253900.1  chitinase domain-containing protein 1 precursor

      See identical proteins and their annotated locations for NP_001253900.1

      Status: PROVISIONAL

      Source sequence(s)
      JU476891
      UniProtKB/TrEMBL
      A0A1D5QC79, A0A8J8XY17, G7NBJ8, I0FUE5
      Conserved Domains (1) summary
      cd02876
      Location:77 → 393
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      924207..966926 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015113187.2 → XP_014968673.1  chitinase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QC79, A0A8J8XY17, G7NBJ8, I0FUE5
      Related
      ENSMMUP00000077193.1, ENSMMUT00000079403.1
      Conserved Domains (1) summary
      cd02876
      Location:77 → 393
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    2. XM_015113188.2 → XP_014968674.1  chitinase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QC79, A0A8J8XY17, G7NBJ8, I0FUE5
      Related
      ENSMMUP00000046662.1, ENSMMUT00000066437.2
      Conserved Domains (1) summary
      cd02876
      Location:77 → 393
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    3. XM_015113189.2 → XP_014968675.1  chitinase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QC79, A0A8J8XY17, G7NBJ8, I0FUE5
      Conserved Domains (1) summary
      cd02876
      Location:77 → 393
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    4. XM_028832589.1 → XP_028688422.1  chitinase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QC79, A0A8J8XY17, G7NBJ8, I0FUE5
      Related
      ENSMMUP00000004830.4, ENSMMUT00000005126.4
      Conserved Domains (1) summary
      cd02876
      Location:77 → 393
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    5. XM_015113190.2 → XP_014968676.2  chitinase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6QEW6, I0FUE5
      Related
      ENSMMUP00000004829.4, ENSMMUT00000005125.4
      Conserved Domains (1) summary
      cd02876
      Location:105 → 421
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    6. XM_028832588.1 → XP_028688421.1  chitinase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      I0FUE5
      Conserved Domains (1) summary
      cd02876
      Location:77 → 347
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.