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    VMP1 vacuole membrane protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711648, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VMP1provided by VGNC
    Official Full Name
    vacuole membrane protein 1provided by VGNC
    Primary source
    VGNC:VGNC:104673
    Locus tag
    EGK_08598
    See related
    Ensembl:ENSMMUG00000048926
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    TMEM49
    Orthologs
    human mouse all
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    Genomic context

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    See VMP1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (36956394..37096785, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (53200765..53342898)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial pseudogene Neighboring gene tubulin delta 1 Neighboring gene U6 spliceosomal RNA Neighboring gene microRNA mir-21 Neighboring gene peptidyl-tRNA hydrolase 2 Neighboring gene clathrin heavy chain Neighboring gene DEAH-box helicase 40

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. Magness CL, et al. Genome Biol, 2005. PMID 15998449, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuole membrane protein 1
    Names
    transmembrane protein 49

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001190897.1 → NP_001177826.1  vacuole membrane protein 1

      Status: VALIDATED

      Source sequence(s)
      CO582188, CO648515, CO726523
      UniProtKB/TrEMBL
      A0A5F8AAZ2
      Related
      ENSMMUP00000074140.1, ENSMMUT00000096866.1
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      36956394..37096785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119971.2 → XP_014975457.1  vacuole membrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AAZ2, A0A8J8YRB1, F7GM05, G7NHZ1, H9G097
      Related
      ENSMMUP00000002328.4, ENSMMUT00000002462.4
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein

    2. XM_028835613.1 → XP_028691446.1  vacuole membrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AAZ2, A0A8J8YRB1, F7GM05, G7NHZ1, H9G097
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein

    3. XM_028835614.1 → XP_028691447.1  vacuole membrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AAZ2, A0A8J8YRB1, F7GM05, G7NHZ1, H9G097
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein

    4. XM_015119970.2 → XP_014975456.1  vacuole membrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AAZ2, A0A8J8YRB1, F7GM05, G7NHZ1, H9G097
      Related
      ENSMMUP00000069176.1, ENSMMUT00000101398.1
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein
    Nucleotide Protein
    Heading Accession and Version

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