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    SLF2 SMC5-SMC6 complex localization factor 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710786, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLF2provided by VGNC
    Official Full Name
    SMC5-SMC6 complex localization factor 2provided by VGNC
    Primary source
    VGNC:VGNC:106104
    See related
    Ensembl:ENSMMUG00000013418
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    FAM178A
    Orthologs
    human mouse all
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    Genomic context

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    See SLF2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (101374422..101438582)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (96564331..96601908)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670023 Neighboring gene uncharacterized LOC114670024 Neighboring gene paired box 2 Neighboring gene semaphorin 4G Neighboring gene mitochondrial ribosomal protein L43 Neighboring gene twinkle mtDNA helicase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SMC5-SMC6 complex localization factor protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      101374422..101438582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826773.1 → XP_028682606.1  SMC5-SMC6 complex localization factor protein 2 isoform X4

      UniProtKB/TrEMBL
      F6Z2N4, H9ZB41
      Related
      ENSMMUP00000017626.4, ENSMMUT00000018822.4
      Conserved Domains (1) summary
      pfam14816
      Location:593 → 965
      FAM178; Family of unknown function, FAM178

    2. XM_028826772.1 → XP_028682605.1  SMC5-SMC6 complex localization factor protein 2 isoform X3

      UniProtKB/TrEMBL
      H9ZB41
      Conserved Domains (2) summary
      PTZ00108
      Location:335 → 621
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam14816
      Location:656 → 1028
      FAM178; Family of unknown function, FAM178

    3. XM_028826771.1 → XP_028682604.1  SMC5-SMC6 complex localization factor protein 2 isoform X1

      UniProtKB/TrEMBL
      G7N0Y0, H9ZB41
      Related
      ENSMMUP00000042798.2, ENSMMUT00000075213.2
      Conserved Domains (1) summary
      pfam14816
      Location:657 → 1029
      FAM178; Family of unknown function, FAM178

    4. XM_028826774.1 → XP_028682607.1  SMC5-SMC6 complex localization factor protein 2 isoform X5

      UniProtKB/TrEMBL
      H9ZB41
      Conserved Domains (1) summary
      pfam14816
      Location:655 → 1010
      FAM178; Family of unknown function, FAM178

    5. XM_015147963.2 → XP_015003449.2  SMC5-SMC6 complex localization factor protein 2 isoform X2

      UniProtKB/TrEMBL
      F6Z2Q1, H9FWZ9, H9ZB41
      Related
      ENSMMUP00000017623.4, ENSMMUT00000018819.4
      Conserved Domains (2) summary
      PTZ00108
      Location:336 → 622
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam14816
      Location:657 → 1029
      FAM178; Family of unknown function, FAM178

    6. XM_028826776.1 → XP_028682609.1  SMC5-SMC6 complex localization factor protein 2 isoform X6

      Conserved Domains (1) summary
      pfam14816
      Location:4 → 376
      FAM178; Family of unknown function, FAM178
    Nucleotide Protein
    Heading Accession and Version

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