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    THUMPD1 THUMP domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696746, updated on 17-Aug-2024

    Summary

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    Official Symbol
    THUMPD1provided by VGNC
    Official Full Name
    THUMP domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:99610
    Locus tag
    EGK_12570
    See related
    Ensembl:ENSMMUG00000004225
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See THUMPD1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (19422735..19452130, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (19753293..19783047, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A synthetase ACSM2B, mitochondrial Neighboring gene acyl-CoA synthetase medium chain family member 1 Neighboring gene uncharacterized LOC114674448 Neighboring gene acyl-CoA synthetase medium chain family member 3 Neighboring gene uncharacterized LOC114674447 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THUMP domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265929.2 → NP_001252858.1  THUMP domain-containing protein 1

      See identical proteins and their annotated locations for NP_001252858.1

      Status: PROVISIONAL

      Source sequence(s)
      JV047589
      UniProtKB/TrEMBL
      A0A1D5Q1J7, A0A8J8XRZ5, F6Z305, G7NPY7, H9FWW5
      Related
      ENSMMUP00000053942.1, ENSMMUT00000074309.2
      Conserved Domains (1) summary
      cd11717
      Location:45 → 254
      THUMP_THUMPD1_like; THUMP domain-containing protein 1-like

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      19422735..19452130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125659.2 → XP_014981145.1  THUMP domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q1J7, A0A8J8XRZ5, F6Z305, G7NPY7, H9FWW5
      Conserved Domains (1) summary
      cd11717
      Location:45 → 254
      THUMP_THUMPD1_like; THUMP domain-containing protein 1-like

    2. XM_015125658.2 → XP_014981144.1  THUMP domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q1J7, A0A8J8XRZ5, F6Z305, G7NPY7, H9FWW5
      Related
      ENSMMUP00000041909.2, ENSMMUT00000054118.2
      Conserved Domains (1) summary
      cd11717
      Location:45 → 254
      THUMP_THUMPD1_like; THUMP domain-containing protein 1-like

    RNA

    1. XR_001441668.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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