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    HMGA1 high mobility group AT-hook 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718536, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HMGA1provided by VGNC
    Official Full Name
    high mobility group AT-hook 1provided by VGNC
    Primary source
    VGNC:VGNC:81076
    See related
    Ensembl:ENSMMUG00000019529
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HMGA1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (135249533..135259619, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (35089780..35103160)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 3 Neighboring gene uncharacterized LOC106997914 Neighboring gene 40S ribosomal protein S26-like Neighboring gene small integral membrane protein 29 Neighboring gene glutamate metabotropic receptor 4 Neighboring gene motilin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein HMG-I/HMG-Y

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266352.1 → NP_001253281.1  high mobility group protein HMG-I/HMG-Y

      See identical proteins and their annotated locations for NP_001253281.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046915
      UniProtKB/TrEMBL
      H9Z8B9

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      135249533..135259619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028846865.1 → XP_028702698.1  high mobility group protein HMG-I/HMG-Y isoform X1

      UniProtKB/TrEMBL
      H9FTR0

    2. XM_028846869.1 → XP_028702702.1  high mobility group protein HMG-I/HMG-Y isoform X2

      UniProtKB/TrEMBL
      H9Z8B9

    3. XM_028846868.1 → XP_028702701.1  high mobility group protein HMG-I/HMG-Y isoform X1

      UniProtKB/TrEMBL
      H9FTR0

    4. XM_028846866.1 → XP_028702699.1  high mobility group protein HMG-I/HMG-Y isoform X1

      UniProtKB/TrEMBL
      H9FTR0
      Related
      ENSMMUP00000067547.1, ENSMMUT00000085453.1

    5. XM_028846867.1 → XP_028702700.1  high mobility group protein HMG-I/HMG-Y isoform X1

      UniProtKB/TrEMBL
      H9FTR0

    6. XM_028846870.1 → XP_028702703.1  high mobility group protein HMG-I/HMG-Y isoform X2

      UniProtKB/TrEMBL
      H9Z8B9
    Nucleotide Protein
    Heading Accession and Version

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