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    CTNNA1 catenin alpha 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 574385, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CTNNA1provided by VGNC
    Official Full Name
    catenin alpha 1provided by VGNC
    Primary source
    VGNC:VGNC:84291
    See related
    Ensembl:ENSMMUG00000017985
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CTNNA1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (136163267..136340323)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (136483016..136659993)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114679024 Neighboring gene leucine rich repeat transmembrane neuronal 2 Neighboring gene uncharacterized LOC114679025 Neighboring gene uncharacterized LOC114679026 Neighboring gene SIL1 nucleotide exchange factor Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elevated gene expression levels distinguish human from non-human primate brains. Cáceres M, et al. Proc Natl Acad Sci U S A, 2003 Oct 28. PMID 14557539, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables beta-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    catenin alpha-1
    Names
    catenin (cadherin-associated protein), alpha 1, 102kDa
    catenin alpha 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257368.1 → NP_001244297.1  catenin alpha-1

      See identical proteins and their annotated locations for NP_001244297.1

      Status: PROVISIONAL

      Source sequence(s)
      JU333090
      UniProtKB/TrEMBL
      F6UDA1, F7DN38, H9Z5L1
      Related
      ENSMMUP00000023641.3, ENSMMUT00000025270.4
      Conserved Domains (1) summary
      pfam01044
      Location:82 → 867
      Vinculin; Vinculin family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      136163267..136340323
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015140788.2 → XP_014996274.1  catenin alpha-1 isoform X1

      Conserved Domains (1) summary
      pfam01044
      Location:1 → 497
      Vinculin; Vinculin family

    2. XM_015140789.2 → XP_014996275.1  catenin alpha-1 isoform X1

      Conserved Domains (1) summary
      pfam01044
      Location:1 → 497
      Vinculin; Vinculin family

    3. XM_028849025.1 → XP_028704858.1  catenin alpha-1 isoform X1

      Conserved Domains (1) summary
      pfam01044
      Location:1 → 497
      Vinculin; Vinculin family

    4. XM_028849024.1 → XP_028704857.1  catenin alpha-1 isoform X1

      Conserved Domains (1) summary
      pfam01044
      Location:1 → 497
      Vinculin; Vinculin family
    Nucleotide Protein
    Heading Accession and Version

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