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    CLPTM1 CLPTM1 regulator of GABA type A receptor forward trafficking [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718306, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CLPTM1provided by VGNC
    Official Full Name
    CLPTM1 regulator of GABA type A receptor forward traffickingprovided by VGNC
    Primary source
    VGNC:VGNC:71265
    See related
    Ensembl:ENSMMUG00000002472
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CLPTM1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (44993035..45032900)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (40261683..40302753)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein C4 Neighboring gene apolipoprotein C2 Neighboring gene RELB proto-oncogene, NF-kB subunit Neighboring gene CLK4 associating serine/arginine rich protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleft lip and palate transmembrane protein 1
    Names
    CLPTM1, transmembrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      44993035..45032900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015124243.2 → XP_014979729.1  cleft lip and palate transmembrane protein 1 isoform X1

      UniProtKB/TrEMBL
      H9F941, H9H2U3
      Related
      ENSMMUP00000003326.3, ENSMMUT00000003517.4
      Conserved Domains (1) summary
      pfam05602
      Location:65 → 501
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)

    2. XM_001102772.3 → XP_001102772.1  cleft lip and palate transmembrane protein 1 isoform X2

      See identical proteins and their annotated locations for XP_001102772.1

      UniProtKB/TrEMBL
      A0A1D5QEJ8, H9F941
      Related
      ENSMMUP00000046467.2, ENSMMUT00000068514.2
      Conserved Domains (1) summary
      pfam05602
      Location:57 → 497
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)
    Nucleotide Protein
    Heading Accession and Version

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