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    PADI2 peptidyl arginine deiminase 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711044, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PADI2provided by VGNC
    Official Full Name
    peptidyl arginine deiminase 2provided by VGNC
    Primary source
    VGNC:VGNC:75644
    Locus tag
    EGK_00293
    See related
    Ensembl:ENSMMUG00000001616
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PADI2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (207645531..207697292)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (15764556..15816334, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene peptidyl arginine deiminase 1 Neighboring gene uncharacterized LOC100427744 Neighboring gene succinate dehydrogenase complex iron sulfur subunit B Neighboring gene ATPase cation transporting 13A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-arginine deiminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein-arginine deiminase type-2
    NP_001252712.1
    XP_014978006.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265783.1 → NP_001252712.1  protein-arginine deiminase type-2

      See identical proteins and their annotated locations for NP_001252712.1

      Status: PROVISIONAL

      Source sequence(s)
      JV667333
      UniProtKB/TrEMBL
      A0A5F7ZEL2, A0A8J8Y6A6, F7GTJ1, G7MH55, I2CYG1
      Related
      ENSMMUP00000078331.1, ENSMMUT00000079257.1
      Conserved Domains (3) summary
      pfam03068
      Location:287 → 662
      PAD; Protein-arginine deiminase (PAD)
      pfam08526
      Location:1 → 114
      PAD_N; Protein-arginine deiminase (PAD) N-terminal domain
      pfam08527
      Location:116 → 273
      PAD_M; Protein-arginine deiminase (PAD) middle domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      207645531..207697292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015122520.2 → XP_014978006.2  protein-arginine deiminase type-2 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZEL2, A0A5K1U442
      Related
      ENSMMUP00000002169.4, ENSMMUT00000002293.4
      Conserved Domains (3) summary
      pfam08527
      Location:116 → 295
      PAD_M; Protein-arginine deiminase (PAD) middle domain
      pfam03068
      Location:309 → 684
      PAD; Protein-arginine deiminase (PAD)
      pfam08526
      Location:1 → 114
      PAD_N; Protein-arginine deiminase (PAD) N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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