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    SPIDR scaffold protein involved in DNA repair [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714523, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SPIDRprovided by VGNC
    Official Full Name
    scaffold protein involved in DNA repairprovided by VGNC
    Primary source
    VGNC:VGNC:84118
    See related
    Ensembl:ENSMMUG00000013149
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SPIDR in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (47804108..48286358)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (44857932..45188617)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene dihydrofolate reductase pseudogene Neighboring gene V-type proton ATPase subunit G 1 pseudogene Neighboring gene NSFL1 cofactor p47 pseudogene Neighboring gene 40S ribosomal protein S4, X isoform-like Neighboring gene U6 spliceosomal RNA Neighboring gene CCAAT enhancer binding protein delta Neighboring gene protein kinase, DNA-activated, catalytic subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of establishment of protein localization to chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair-scaffolding protein
    Names
    scaffolding protein involved in DNA repair

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      47804108..48286358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028852651.1 → XP_028708484.1  DNA repair-scaffolding protein isoform X1

      UniProtKB/TrEMBL
      A0A1D5R5F9, G7MZ92
      Related
      ENSMMUP00000055546.2, ENSMMUT00000056820.2
      Conserved Domains (2) summary
      pfam14950
      Location:11 → 394
      DUF4502; Domain of unknown function (DUF4502)
      pfam14951
      Location:546 → 930
      DUF4503; Domain of unknown function (DUF4503)

    2. XM_028852653.1 → XP_028708486.1  DNA repair-scaffolding protein isoform X3

      UniProtKB/TrEMBL
      G7MZ92
      Conserved Domains (2) summary
      pfam14950
      Location:11 → 394
      DUF4502; Domain of unknown function (DUF4502)
      pfam14951
      Location:546 → 845
      DUF4503; Domain of unknown function (DUF4503)

    3. XM_028852652.1 → XP_028708485.1  DNA repair-scaffolding protein isoform X2

      UniProtKB/TrEMBL
      F6Z8R6, G7MZ92
      Related
      ENSMMUP00000017275.4, ENSMMUT00000018449.4
      Conserved Domains (2) summary
      pfam14950
      Location:11 → 394
      DUF4502; Domain of unknown function (DUF4502)
      pfam14951
      Location:546 → 805
      DUF4503; Domain of unknown function (DUF4503)

    4. XM_028852655.1 → XP_028708488.1  DNA repair-scaffolding protein isoform X5

      Conserved Domains (2) summary
      pfam14950
      Location:5 → 119
      DUF4502; Domain of unknown function (DUF4502)
      pfam14951
      Location:271 → 655
      DUF4503; Domain of unknown function (DUF4503)

    5. XM_028852654.1 → XP_028708487.1  DNA repair-scaffolding protein isoform X4

      UniProtKB/TrEMBL
      G7MZ92
      Conserved Domains (2) summary
      pfam14950
      Location:2 → 195
      DUF4502; Domain of unknown function (DUF4502)
      pfam14951
      Location:347 → 731
      DUF4503; Domain of unknown function (DUF4503)

    6. XM_015145324.2 → XP_015000810.2  DNA repair-scaffolding protein isoform X6

      Conserved Domains (2) summary
      pfam14950
      Location:40 → 118
      DUF4502; Domain of unknown function (DUF4502)
      pfam14951
      Location:270 → 654
      DUF4503; Domain of unknown function (DUF4503)

    7. XM_028852658.1 → XP_028708491.1  DNA repair-scaffolding protein isoform X9

      Conserved Domains (1) summary
      pfam14951
      Location:24 → 408
      DUF4503; Domain of unknown function (DUF4503)

    8. XM_028852656.1 → XP_028708489.1  DNA repair-scaffolding protein isoform X7

      Conserved Domains (1) summary
      pfam14951
      Location:59 → 443
      DUF4503; Domain of unknown function (DUF4503)

    9. XM_028852660.1 → XP_028708493.1  DNA repair-scaffolding protein isoform X11

      Conserved Domains (1) summary
      pfam14951
      Location:26 → 410
      DUF4503; Domain of unknown function (DUF4503)

    10. XM_028852657.1 → XP_028708490.1  DNA repair-scaffolding protein isoform X8

      Conserved Domains (1) summary
      pfam14951
      Location:38 → 422
      DUF4503; Domain of unknown function (DUF4503)

    11. XM_028852659.1 → XP_028708492.1  DNA repair-scaffolding protein isoform X10

      Conserved Domains (1) summary
      pfam14951
      Location:1 → 380
      DUF4503; Domain of unknown function (DUF4503)
    Nucleotide Protein
    Heading Accession and Version

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