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    TRERF1 transcriptional regulating factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696006, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRERF1provided by VGNC
    Official Full Name
    transcriptional regulating factor 1provided by VGNC
    Primary source
    VGNC:VGNC:79121
    See related
    Ensembl:ENSMMUG00000005575
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRERF1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (126901365..127130464)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (43222990..43451257, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ubiquitin protein ligase E3 component n-recognin 2 Neighboring gene small nucleolar RNA U13 Neighboring gene small nucleolar RNA U3 Neighboring gene mitochondrial ribosomal protein S10 Neighboring gene guanylate cyclase activator 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional-regulating factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      126901365..127130464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028847569.1 → XP_028703402.1  transcriptional-regulating factor 1 isoform X1

      UniProtKB/TrEMBL
      G7MPB8
      Conserved Domains (5) summary
      sd00018
      Location:1145 → 1167
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1145 → 1167
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:800 → 854
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:908 → 952
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_015136350.2 → XP_014991836.2  transcriptional-regulating factor 1 isoform X5

      UniProtKB/TrEMBL
      G7MPB8
      Conserved Domains (5) summary
      sd00017
      Location:1033 → 1055
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1104 → 1126
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:800 → 854
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:908 → 952
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    3. XM_015136352.2 → XP_014991838.2  transcriptional-regulating factor 1 isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZAD0, G7MPB8
      Related
      ENSMMUP00000061584.1, ENSMMUT00000085402.1
      Conserved Domains (5) summary
      sd00017
      Location:1013 → 1035
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1084 → 1106
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:780 → 834
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:888 → 932
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    4. XM_028847567.1 → XP_028703400.1  transcriptional-regulating factor 1 isoform X1

      UniProtKB/TrEMBL
      G7MPB8
      Conserved Domains (5) summary
      sd00018
      Location:1145 → 1167
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1145 → 1167
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:800 → 854
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:908 → 952
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    5. XM_028847570.1 → XP_028703403.1  transcriptional-regulating factor 1 isoform X2

      UniProtKB/TrEMBL
      G7MPB8
      Conserved Domains (5) summary
      sd00017
      Location:1062 → 1084
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1133 → 1155
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:800 → 854
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:908 → 952
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    6. XM_015136347.2 → XP_014991833.2  transcriptional-regulating factor 1 isoform X4

      UniProtKB/TrEMBL
      G7MPB8
      Conserved Domains (4) summary
      pfam00096
      Location:1116 → 1138
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:800 → 854
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:908 → 952
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    7. XM_028847571.1 → XP_028703404.1  transcriptional-regulating factor 1 isoform X3

      UniProtKB/TrEMBL
      G7MPB8
      Conserved Domains (5) summary
      sd00018
      Location:1125 → 1147
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1125 → 1147
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:780 → 834
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:888 → 932
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    8. XM_028847572.1 → XP_028703405.1  transcriptional-regulating factor 1 isoform X7

      UniProtKB/TrEMBL
      F7G834
      Conserved Domains (4) summary
      pfam00096
      Location:1042 → 1064
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:697 → 751
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:805 → 849
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    9. XM_015136354.2 → XP_014991840.2  transcriptional-regulating factor 1 isoform X8

      UniProtKB/TrEMBL
      F7G834
      Conserved Domains (4) summary
      pfam00096
      Location:1013 → 1035
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:697 → 751
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:805 → 849
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    10. XM_015136355.2 → XP_014991841.2  transcriptional-regulating factor 1 isoform X9

      UniProtKB/TrEMBL
      F7G834, F7G839
      Related
      ENSMMUP00000007363.4, ENSMMUT00000007836.4
      Conserved Domains (5) summary
      sd00017
      Location:930 → 952
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1001 → 1023
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:697 → 751
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:805 → 849
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    11. XM_028847568.1 → XP_028703401.1  transcriptional-regulating factor 1 isoform X1

      UniProtKB/TrEMBL
      G7MPB8
      Conserved Domains (5) summary
      sd00018
      Location:1145 → 1167
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1145 → 1167
      zf-C2H2; Zinc finger, C2H2 type
      pfam01448
      Location:800 → 854
      ELM2; ELM2 domain
      pfam13912
      Location:514 → 534
      zf-C2H2_6; C2H2-type zinc finger
      cl21498
      Location:908 → 952
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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