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    SNX13 sorting nexin 13 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714019, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNX13provided by VGNC
    Official Full Name
    sorting nexin 13provided by VGNC
    Primary source
    VGNC:VGNC:77753
    See related
    Ensembl:ENSMMUG00000021915
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNX13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (97098478..97273589)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (93770108..93948150, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene rRNA methyltransferase 3, mitochondrial pseudogene Neighboring gene uncharacterized LOC114669807 Neighboring gene uncharacterized LOC114677121 Neighboring gene uncharacterized LOC106997517 Neighboring gene uncharacterized LOC114676972 Neighboring gene uncharacterized LOC106997516

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      97098478..97273589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015133940.2 → XP_014989426.1  sorting nexin-13 isoform X4

      UniProtKB/TrEMBL
      H9YY83
      Related
      ENSMMUP00000058652.2, ENSMMUT00000060926.2
      Conserved Domains (4) summary
      cd06873
      Location:557 → 687
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:377 → 511
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:97 → 284
      PXA; Domain associated with PX domains
      pfam08628
      Location:803 → 911
      Nexin_C; Sorting nexin C terminal

    2. XM_015133938.2 → XP_014989424.1  sorting nexin-13 isoform X5

      UniProtKB/TrEMBL
      F6WJA8, H9EQ37, H9YY83
      Related
      ENSMMUP00000035127.2, ENSMMUT00000042129.3
      Conserved Domains (4) summary
      cd06873
      Location:557 → 676
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:377 → 511
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:97 → 284
      PXA; Domain associated with PX domains
      pfam08628
      Location:792 → 900
      Nexin_C; Sorting nexin C terminal

    3. XM_028845990.1 → XP_028701823.1  sorting nexin-13 isoform X8

      Conserved Domains (4) summary
      cd06873
      Location:354 → 473
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:174 → 308
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      cl02564
      Location:13 → 81
      PXA; PXA domain
      pfam08628
      Location:589 → 697
      Nexin_C; Sorting nexin C terminal

    4. XM_015133941.2 → XP_014989427.1  sorting nexin-13 isoform X1

      UniProtKB/TrEMBL
      F6T563
      Conserved Domains (4) summary
      cd06873
      Location:477 → 607
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:297 → 431
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:17 → 204
      PXA; Domain associated with PX domains
      pfam08628
      Location:723 → 831
      Nexin_C; Sorting nexin C terminal

    5. XM_015133939.2 → XP_014989425.2  sorting nexin-13 isoform X6

      UniProtKB/TrEMBL
      F6T552
      Related
      ENSMMUP00000028855.4, ENSMMUT00000030832.4
      Conserved Domains (4) summary
      cd06873
      Location:477 → 607
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:297 → 431
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:17 → 204
      PXA; Domain associated with PX domains
      pfam08628
      Location:723 → 820
      Nexin_C; Sorting nexin C terminal

    6. XM_015133937.2 → XP_014989423.2  sorting nexin-13 isoform X3

      UniProtKB/TrEMBL
      F6T552
      Related
      ENSMMUP00000066791.1, ENSMMUT00000099166.1
      Conserved Domains (4) summary
      cd06873
      Location:477 → 607
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:297 → 431
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:17 → 204
      PXA; Domain associated with PX domains
      pfam08628
      Location:723 → 820
      Nexin_C; Sorting nexin C terminal

    7. XM_015133935.2 → XP_014989421.2  sorting nexin-13 isoform X1

      UniProtKB/TrEMBL
      F6T563
      Conserved Domains (4) summary
      cd06873
      Location:477 → 607
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:297 → 431
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:17 → 204
      PXA; Domain associated with PX domains
      pfam08628
      Location:723 → 831
      Nexin_C; Sorting nexin C terminal

    8. XM_028845988.1 → XP_028701821.1  sorting nexin-13 isoform X7

      UniProtKB/TrEMBL
      A0A5F7ZR73
      Conserved Domains (4) summary
      cd06873
      Location:477 → 607
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:297 → 431
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:17 → 204
      PXA; Domain associated with PX domains
      pfam08628
      Location:645 → 753
      Nexin_C; Sorting nexin C terminal

    9. XM_015133936.2 → XP_014989422.2  sorting nexin-13 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AUL0, F6T563
      Related
      ENSMMUP00000081164.1, ENSMMUT00000092044.1
      Conserved Domains (4) summary
      cd06873
      Location:477 → 596
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:297 → 431
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:17 → 204
      PXA; Domain associated with PX domains
      pfam08628
      Location:712 → 820
      Nexin_C; Sorting nexin C terminal

    10. XM_028845989.1 → XP_028701822.1  sorting nexin-13 isoform X1

      UniProtKB/TrEMBL
      F6T563
      Conserved Domains (4) summary
      cd06873
      Location:477 → 607
      PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
      cd08719
      Location:297 → 431
      RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
      smart00313
      Location:17 → 204
      PXA; Domain associated with PX domains
      pfam08628
      Location:723 → 831
      Nexin_C; Sorting nexin C terminal

    RNA

    1. XR_003728224.1 RNA Sequence

    2. XR_001443716.2 RNA Sequence

    3. XR_003728223.1 RNA Sequence

    4. XR_003728222.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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