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    COL5A2 collagen type V alpha 2 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712935, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL5A2provided by VGNC
    Official Full Name
    collagen type V alpha 2 chainprovided by VGNC
    Primary source
    VGNC:VGNC:71301
    See related
    Ensembl:ENSMMUG00000021290
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL5A2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    59
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (76167183..76499441, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (76436398..76871545, complement)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671374 Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene microRNA mir-1245 Neighboring gene collagen type III alpha 1 chain Neighboring gene keratin, type I cytoskeletal 18 pseudogene Neighboring gene exosome complex component CSL4 pseudogene Neighboring gene uncharacterized LOC114671376 Neighboring gene 60S ribosomal protein L3-like Neighboring gene WD repeat domain 75

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in skin development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of collagen type V trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-2(V) chain
    Names
    alpha 2 type V collagen
    collagen alpha-2(V) chain preproprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      76167183..76499441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015110522.2 → XP_014966008.1  collagen alpha-2(V) chain isoform X2

      UniProtKB/TrEMBL
      F6V0G5
      Conserved Domains (4) summary
      pfam00093
      Location:1 → 50
      VWC; von Willebrand factor type C domain
      pfam09606
      Location:237 → 581
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam01391
      Location:467 → 523
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1219 → 1452
      COLFI; Fibrillar collagen C-terminal domain

    2. XM_015110524.2 → XP_014966010.1  collagen alpha-2(V) chain isoform X2

      UniProtKB/TrEMBL
      F6V0G5
      Related
      ENSMMUP00000028043.4, ENSMMUT00000029964.4
      Conserved Domains (4) summary
      pfam00093
      Location:1 → 50
      VWC; von Willebrand factor type C domain
      pfam09606
      Location:237 → 581
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam01391
      Location:467 → 523
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01410
      Location:1219 → 1452
      COLFI; Fibrillar collagen C-terminal domain

    3. XM_015110521.2 → XP_014966007.1  collagen alpha-2(V) chain isoform X1

      UniProtKB/TrEMBL
      F6V0F2
      Related
      ENSMMUP00000028044.4, ENSMMUT00000029965.4
      Conserved Domains (3) summary
      pfam01391
      Location:495 → 553
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:41 → 96
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1267 → 1498
      COLFI; Fibrillar collagen C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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