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    SDF4 stromal cell derived factor 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699804, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SDF4provided by VGNC
    Official Full Name
    stromal cell derived factor 4provided by VGNC
    Primary source
    VGNC:VGNC:77092
    See related
    Ensembl:ENSMMUG00000019518
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SDF4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (223189159..223204593)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (312336..327956, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene C1q and TNF related 12 Neighboring gene beta-1,3-galactosyltransferase 6 Neighboring gene TNF receptor superfamily member 4 Neighboring gene TNF receptor superfamily member 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-ion regulated exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    45 kDa calcium-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      223189159..223204593
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015117111.2 → XP_014972597.1  45 kDa calcium-binding protein isoform X2

      UniProtKB/TrEMBL
      F7CX80, H9FVA4, I2CUP3
      Related
      ENSMMUP00000025642.3, ENSMMUT00000027418.4
      Conserved Domains (3) summary
      cd00051
      Location:102 → 161
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:103 → 163
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:288 → 341
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. XM_015116456.2 → XP_014971942.2  45 kDa calcium-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A5F8ATB0, I2CUP3
      Related
      ENSMMUP00000080333.1, ENSMMUT00000087926.1
      Conserved Domains (1) summary
      cd16225
      Location:67 → 392
      EFh_CREC_cab45; EF-hand, calcium binding motif, found in 45 kDa calcium-binding protein (Cab45)
    Nucleotide Protein
    Heading Accession and Version

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