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    COL1A1 collagen type I alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 574201, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL1A1provided by VGNC
    Official Full Name
    collagen type I alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:82129
    See related
    Ensembl:ENSMMUG00000001467
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL1A1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    50
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (46588741..46606662)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (39351597..39369520)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene sarcoglycan alpha Neighboring gene H1.9 linker histone Neighboring gene protein phosphatase 1 regulatory subunit 9B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Maternal nicotine exposure upregulates collagen gene expression in fetal monkey lung. Association with alpha7 nicotinic acetylcholine receptors. Sekhon HS, et al. Am J Respir Cell Mol Biol, 2002 Jan. PMID 11751201
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(I) chain
    Names
    collagen alpha-1(I) chain preproprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      46588741..46606662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119317.2 → XP_014974803.1  collagen alpha-1(I) chain isoform X1

      Conserved Domains (4) summary
      pfam01391
      Location:270 → 329
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:40 → 95
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1264 → 1497
      COLFI; Fibrillar collagen C-terminal domain
      cl26386
      Location:483 → 674
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

    2. XM_015119319.2 → XP_014974805.1  collagen alpha-1(I) chain isoform X3

      Conserved Domains (3) summary
      pfam01391
      Location:270 → 329
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:40 → 95
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:955 → 1191
      COLFI; Fibrillar collagen C-terminal domain

    3. XM_015119318.2 → XP_014974804.1  collagen alpha-1(I) chain isoform X2

      UniProtKB/TrEMBL
      F7BJV7, H9Z595
      Related
      ENSMMUP00000001955.4, ENSMMUT00000002071.4
      Conserved Domains (4) summary
      pfam01391
      Location:236 → 295
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:40 → 95
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1230 → 1463
      COLFI; Fibrillar collagen C-terminal domain
      cl26386
      Location:449 → 640
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    Nucleotide Protein
    Heading Accession and Version

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