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    LOC709684 protein SSX4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709684, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC709684
    Gene description
    protein SSX4
    See related
    Ensembl:ENSMMUG00000014463
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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    Genomic context

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    See LOC709684 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (48375506..48384793)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (48600977..48610249)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene ornithine aminotransferase, mitochondrial-like Neighboring gene ornithine aminotransferase, mitochondrial-like Neighboring gene ornithine aminotransferase, mitochondrial-like Neighboring gene SSX family member 3 Neighboring gene ornithine aminotransferase, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SSX4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      48375506..48384793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002806223.3 → XP_002806269.1  protein SSX4

      UniProtKB/TrEMBL
      A0A5F8A1B3, A0A5F8AEC0
      Related
      ENSMMUP00000071149.1, ENSMMUT00000104793.1
      Conserved Domains (3) summary
      smart00349
      Location:23 → 80
      KRAB; krueppel associated box
      pfam09514
      Location:156 → 187
      SSXRD; SSXRD motif
      cl02581
      Location:24 → 61
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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