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    IFT140 intraflagellar transport 140 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701568, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IFT140provided by VGNC
    Official Full Name
    intraflagellar transport 140provided by VGNC
    Primary source
    VGNC:VGNC:73456
    See related
    Ensembl:ENSMMUG00000000044
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See IFT140 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (1531972..1637703, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (1502393..1608105, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene chloride voltage-gated channel 7 Neighboring gene pentraxin 4 Neighboring gene telomere maintenance 2 Neighboring gene transmembrane protein 204 Neighboring gene cramped chromatin regulator homolog 1 Neighboring gene Jupiter microtubule associated homolog 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intraciliary retrograde transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle A IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 140 homolog
    Names
    intraflagellar transport 140 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      1531972..1637703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125280.2 → XP_014980766.2  intraflagellar transport protein 140 homolog isoform X1

      UniProtKB/TrEMBL
      F6Q6W1, G7NQS5, H9ZFU0
      Related
      ENSMMUP00000004845.4, ENSMMUT00000005142.4
      Conserved Domains (5) summary
      COG2319
      Location:102 → 434
      WD40; WD40 repeat [General function prediction only]
      TIGR02917
      Location:833 → 1233
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:803 → 837
      TPR; TPR repeat [structural motif]
      sd00039
      Location:18 → 55
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:15 → 167
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_028840989.1 → XP_028696822.1  intraflagellar transport protein 140 homolog isoform X1

      UniProtKB/TrEMBL
      F6Q6W1, G7NQS5, H9ZFU0
      Conserved Domains (5) summary
      COG2319
      Location:102 → 434
      WD40; WD40 repeat [General function prediction only]
      TIGR02917
      Location:833 → 1233
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:803 → 837
      TPR; TPR repeat [structural motif]
      sd00039
      Location:18 → 55
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:15 → 167
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_028840990.1 → XP_028696823.1  intraflagellar transport protein 140 homolog isoform X2

      UniProtKB/TrEMBL
      G7NQS5, H9ZFU0
      Conserved Domains (5) summary
      COG2319
      Location:102 → 434
      WD40; WD40 repeat [General function prediction only]
      TIGR02917
      Location:833 → 1233
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:803 → 837
      TPR; TPR repeat [structural motif]
      sd00039
      Location:18 → 55
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:15 → 167
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_015125281.2 → XP_014980767.2  intraflagellar transport protein 140 homolog isoform X3

      UniProtKB/TrEMBL
      H9ZFU0
      Conserved Domains (5) summary
      COG0457
      Location:833 → 1038
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      COG2319
      Location:102 → 434
      WD40; WD40 repeat [General function prediction only]
      sd00006
      Location:803 → 837
      TPR; TPR repeat [structural motif]
      sd00039
      Location:18 → 55
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:15 → 167
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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