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    LINGO1 leucine rich repeat and Ig domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714985, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LINGO1provided by VGNC
    Official Full Name
    leucine rich repeat and Ig domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:74094
    Locus tag
    EGK_17712
    See related
    Ensembl:ENSMMUG00000001782
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LINGO1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (54845121..55050450, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (55091442..55296100, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene non-histone chromosomal protein HMG-17 Neighboring gene uncharacterized LOC114679459 Neighboring gene high mobility group 20A Neighboring gene chondroitin sulfate proteoglycan 4-like Neighboring gene MKI67 FHA domain-interacting nucleolar phosphoprotein pseudogene Neighboring gene golgin subfamily A member 6C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
    Names
    leucine-rich repeat neuronal 6A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      54845121..55050450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142810.2 → XP_014998296.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R8J7, A0A8J8XIC8, F7GJ28, G7MYF0, H9G0Y1
      Related
      ENSMMUP00000056637.1, ENSMMUT00000068941.2
      Conserved Domains (6) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      smart00013
      Location:35 → 69
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:114 → 173
      LRR_8; Leucine rich repeat
      cd20969
      Location:417 → 508
      IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
      cd21340
      Location:184 → 365
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    2. XM_002804890.3 → XP_002804936.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      See identical proteins and their annotated locations for XP_002804936.1

      UniProtKB/TrEMBL
      A0A1D5R8J7, A0A8J8XIC8, F7GJ28, G7MYF0, H9G0Y1
      Conserved Domains (6) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      smart00013
      Location:35 → 69
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:114 → 173
      LRR_8; Leucine rich repeat
      cd20969
      Location:417 → 508
      IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
      cd21340
      Location:184 → 365
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    3. XM_015142808.2 → XP_014998294.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R8J7, A0A8J8XIC8, F7GJ28, G7MYF0, H9G0Y1
      Conserved Domains (6) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      smart00013
      Location:35 → 69
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:114 → 173
      LRR_8; Leucine rich repeat
      cd20969
      Location:417 → 508
      IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
      cd21340
      Location:184 → 365
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    4. XM_015142811.2 → XP_014998297.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R8J7, A0A8J8XIC8, F7GJ28, G7MYF0, H9G0Y1
      Conserved Domains (6) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      smart00013
      Location:35 → 69
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:114 → 173
      LRR_8; Leucine rich repeat
      cd20969
      Location:417 → 508
      IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
      cd21340
      Location:184 → 365
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    5. XM_028851204.1 → XP_028707037.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R8J7, A0A8J8XIC8, F7GJ28, G7MYF0, H9G0Y1
      Conserved Domains (6) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      smart00013
      Location:35 → 69
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:114 → 173
      LRR_8; Leucine rich repeat
      cd20969
      Location:417 → 508
      IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
      cd21340
      Location:184 → 365
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    6. XM_015142812.2 → XP_014998298.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R8J7, A0A8J8XIC8, F7GJ28, G7MYF0, H9G0Y1
      Conserved Domains (6) summary
      TIGR00864
      Location:335 → 415
      PCC; polycystin cation channel protein
      smart00013
      Location:35 → 69
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 90
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:114 → 173
      LRR_8; Leucine rich repeat
      cd20969
      Location:417 → 508
      IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
      cd21340
      Location:184 → 365
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    7. XM_015142807.2 → XP_014998293.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A5K1UZ25, F7GJ28, H9G0Y1
      Related
      ENSMMUP00000002373.4, ENSMMUT00000002510.4
      Conserved Domains (6) summary
      TIGR00864
      Location:341 → 421
      PCC; polycystin cation channel protein
      smart00013
      Location:41 → 75
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:73 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:120 → 179
      LRR_8; Leucine rich repeat
      cd20969
      Location:423 → 514
      IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
      cd21340
      Location:190 → 371
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    Nucleotide Protein
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