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    LRRC20 leucine rich repeat containing 20 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710594, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LRRC20provided by VGNC
    Official Full Name
    leucine rich repeat containing 20provided by VGNC
    Primary source
    VGNC:VGNC:74339
    See related
    Ensembl:ENSMMUG00000014846
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LRRC20 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (67408482..67495495)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (62063276..62150601)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene nodal growth differentiation factor Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 Neighboring gene non-histone chromosomal protein HMG-14 pseudogene Neighboring gene elongin BC and Polycomb repressive complex 2-associated protein-like Neighboring gene neuropeptide FF receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194412.2 → NP_001181341.1  leucine-rich repeat-containing protein 20

      See identical proteins and their annotated locations for NP_001181341.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000498
      UniProtKB/TrEMBL
      F7F6U7, G7N290
      Conserved Domains (3) summary
      PRK15370
      Location:7 → 184
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00031
      Location:76 → 98
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:26 → 47
      LRR_RI; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      67408482..67495495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001108339.4 → XP_001108339.1  leucine-rich repeat-containing protein 20 isoform X1

      See identical proteins and their annotated locations for XP_001108339.1

      UniProtKB/TrEMBL
      F7F6U7, G7N290
      Related
      ENSMMUP00000019495.1, ENSMMUT00000020834.3
      Conserved Domains (3) summary
      PRK15370
      Location:7 → 184
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00031
      Location:76 → 98
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:26 → 47
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_015147359.2 → XP_015002845.1  leucine-rich repeat-containing protein 20 isoform X2

    3. XM_015147360.2 → XP_015002846.1  leucine-rich repeat-containing protein 20 isoform X3

      Conserved Domains (2) summary
      PLN03150
      Location:20 → 91
      PLN03150; hypothetical protein; Provisional
      sd00031
      Location:7 → 29
      LRR_1; leucine-rich repeat [structural motif]

    4. XM_015147358.2 → XP_015002844.1  leucine-rich repeat-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      F7F6U7, G7N290
      Conserved Domains (3) summary
      PRK15370
      Location:7 → 184
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00031
      Location:76 → 98
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:26 → 47
      LRR_RI; leucine-rich repeat [structural motif]

    RNA

    1. XR_003732791.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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