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    TPR translocated promoter region, nuclear basket protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713910, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TPRprovided by VGNC
    Official Full Name
    translocated promoter region, nuclear basket proteinprovided by VGNC
    Primary source
    VGNC:VGNC:100164
    See related
    Ensembl:ENSMMUG00000009081
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TPR in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    54
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (43535223..43598542, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (180868526..180932087)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene hemicentin 1 Neighboring gene uncharacterized LOC114679540 Neighboring gene U6 spliceosomal RNA Neighboring gene proteoglycan 4 Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene oculomedin Neighboring gene phosducin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoprotein TPR
    Names
    translocated promoter region (to activated MET oncogene)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      43535223..43598542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015121836.2 → XP_014977322.1  nucleoprotein TPR isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZP61
      Related
      ENSMMUP00000011914.4, ENSMMUT00000012704.4
      Conserved Domains (6) summary
      COG1196
      Location:129 → 872
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR04527
      Location:1040 → 1126
      mycoplas_twoTM; two transmembrane protein
      pfam00038
      Location:1392 → 1688
      Filament; Intermediate filament protein
      pfam00901
      Location:318 → 477
      Orbi_VP5; Orbivirus outer capsid protein VP5
      pfam07851
      Location:1509 → 1585
      TMPIT; TMPIT-like protein
      pfam07926
      Location:1114 → 1242
      TPR_MLP1_2; TPR/MLP1/MLP2-like protein

    2. XM_028851465.1 → XP_028707298.1  nucleoprotein TPR isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZP61
      Conserved Domains (5) summary
      COG1196
      Location:222 → 1141
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:849 → 1695
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:81 → 349
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam05109
      Location:1725 → 1944
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam07926
      Location:1114 → 1242
      TPR_MLP1_2; TPR/MLP1/MLP2-like protein

    RNA

    1. XR_003731551.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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