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    RBM17 RNA binding motif protein 17 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712996, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RBM17provided by VGNC
    Official Full Name
    RNA binding motif protein 17provided by VGNC
    Primary source
    VGNC:VGNC:76496
    Locus tag
    EGK_19434
    See related
    Ensembl:ENSMMUG00000015152
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RBM17 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (7269511..7297855)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (6017355..6045673)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene interleukin 15 receptor subunit alpha Neighboring gene uncharacterized LOC107000025 Neighboring gene small nucleolar RNA SNORA14 Neighboring gene interleukin 2 receptor subunit alpha Neighboring gene uncharacterized LOC107000030 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 45
    Names
    45 kDa-splicing factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257732.1 → NP_001244661.1  splicing factor 45

      See identical proteins and their annotated locations for NP_001244661.1

      Status: PROVISIONAL

      Source sequence(s)
      JU320162
      UniProtKB/TrEMBL
      A0A8J8YSQ0, F6UDK4, F7A8J6, G7N1J3
      Related
      ENSMMUP00000019867.2, ENSMMUT00000021246.4
      Conserved Domains (2) summary
      pfam01585
      Location:235 → 279
      G-patch; G-patch domain
      cd12647
      Location:303 → 397
      RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      7269511..7297855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028853492.1 → XP_028709325.1  splicing factor 45 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YSQ0, F6UDK4, F7A8J6, G7N1J3
      Conserved Domains (2) summary
      pfam01585
      Location:235 → 279
      G-patch; G-patch domain
      cd12647
      Location:303 → 397
      RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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